Nesvilab/philosopher: Philosopher 5.0.0

Added Added the protein start and end positions to ions and peptides report. ProtXML reading parallelization. Added a new Extended Peptide column to the PSM report containing the flanking regions of peptides. Group-based FDR scoring capabilities that will rely on the group passed by MSFragger. Support for sCLIP isobaric tags. Changed Rolled back the FASTA header checking for IonQuant. Improved the FASTA header detection and parsing. PTMProphet was updated to v6.2.0. The processing speed, including IO operations and database reading received a major upgrade (@guoci). The purity column will always be visible in the PSM table. Updated the MSstats report for individual data sets. Fixed Updated razor mapping rules to reinforce classifying decoy razor proteins. Fixed a problem where protein names and genes would not be tagged with the decoy tag