This release adds a quality control module to check the results from hicBuildMatrix. By default, now hicBuildMatrix generates a HTML page containing the plots from the QC measures. The results from several runs of hicBuildMatrix can be combined in one page using the new tool hicQC. Also, this release added a module called hicCompareMatrices that takes two Hi-C matrices and compute the difference, the ratio or the log2 ration. The resulting matrix can be plotted with hicPlotMatrix to visualize the changes
Galaxy HiCExplorer is a web server that facilitates the study of the 3D conformation of chromatin by...
Fixing many bugs: A bug in hicDetectLoops if a sub-matrix was very small A bug in hicPlotMatrix if t...
A new TAD prediction method: hicTADClassifier and a method to train own classifiers hicTrainTADClass...
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data
Various cleanups Added option to plot bigwig files as a line hicPlotTADs Updated documentation Impro...
Adding the new captured Hi-C module. Viewpoint analysis based on a background model, significant int...
This release is adding new features and fixes many bugs: hicBuildMatrix: Added multicore support, n...
The 2.1 version of HiCExplorer comes with new features and bugfixes. Adding the new feature hicAggr...
HiCexplorer addresses the common tasks of Hi-C analysis from processing to visualization
Major update for hicDetectLoops: Results are now closer to HiCCUPS, it is faster and needs less memo...
Galaxy HiCExplorer is a web server that facilitates the study of the 3D conformation of chromatin by...
HiC-bench: a Hi-C analysis pipeline that allows combinatorial parameter exploration and benchmarking...
Galaxy HiCExplorer is a web server that facilitates the study of the 3D conformation of chromatin by...
Fixing many bugs: A bug in hicDetectLoops if a sub-matrix was very small A bug in hicPlotMatrix if t...
A new TAD prediction method: hicTADClassifier and a method to train own classifiers hicTrainTADClass...
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data
Various cleanups Added option to plot bigwig files as a line hicPlotTADs Updated documentation Impro...
Adding the new captured Hi-C module. Viewpoint analysis based on a background model, significant int...
This release is adding new features and fixes many bugs: hicBuildMatrix: Added multicore support, n...
The 2.1 version of HiCExplorer comes with new features and bugfixes. Adding the new feature hicAggr...
HiCexplorer addresses the common tasks of Hi-C analysis from processing to visualization
Major update for hicDetectLoops: Results are now closer to HiCCUPS, it is faster and needs less memo...
Galaxy HiCExplorer is a web server that facilitates the study of the 3D conformation of chromatin by...
HiC-bench: a Hi-C analysis pipeline that allows combinatorial parameter exploration and benchmarking...
Galaxy HiCExplorer is a web server that facilitates the study of the 3D conformation of chromatin by...
Fixing many bugs: A bug in hicDetectLoops if a sub-matrix was very small A bug in hicPlotMatrix if t...
A new TAD prediction method: hicTADClassifier and a method to train own classifiers hicTrainTADClass...