xPore is a Python package for identification and quantification of differential RNA modifications from direct RNA sequencing. The detailed usage is documented at https://xpore.readthedocs.io/en/latest, while all scripts and source code are available at https://github.com/GoekeLab/xpore. All the preprocessed datasets used in the paper are provided here. Please cite our paper below when using these data. Ploy N. Pratanwanich et al. "Detection of differential RNA modifications from direct RNA sequencing of human cell lines." bioRxiv (2020)
The covalent modification of RNA molecules is a pervasive feature of all classes of RNAs and has fun...
<p>The total RNA was extracted from FFPE peritumoral tissues using Qiagen RNA extraction kit for FFP...
My thesis focuses on the investigation and characterization of RNA modifications. RNA is post-transc...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
<p>Alternative mRNA processing can result in the generation of multiple, qualitatively different RNA...
In the past few decades, bioinformatics has become an important part of medical research, providing ...
Ribosomal RNAs are decorated by numerous post-transcriptional modifications whose exact roles in rib...
RNA molecules undergo a vast array of chemical post-transcriptional modifications (PTMs) that can af...
Massively parallel sequencing has rapidly revolutionized DNA and RNA research. Sample preparations a...
This dataset contains data files and analysis code associated with manuscript entitled "Parallel rev...
RNA modifications exist in all kingdom of life. Several different types of base or ribose modificati...
RNA A-to-I editing; carried out by the family of adenosine deaminase acting on RNA (ADAR) proteins, ...
The catalytically active component of ribosomes, rRNA, is long studied and heavily modified. However...
The covalent modification of RNA molecules is a pervasive feature of all classes of RNAs and has fun...
<p>The total RNA was extracted from FFPE peritumoral tissues using Qiagen RNA extraction kit for FFP...
My thesis focuses on the investigation and characterization of RNA modifications. RNA is post-transc...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
xPore is a Python package for identification and quantification of differential RNA modifications fr...
<p>Alternative mRNA processing can result in the generation of multiple, qualitatively different RNA...
In the past few decades, bioinformatics has become an important part of medical research, providing ...
Ribosomal RNAs are decorated by numerous post-transcriptional modifications whose exact roles in rib...
RNA molecules undergo a vast array of chemical post-transcriptional modifications (PTMs) that can af...
Massively parallel sequencing has rapidly revolutionized DNA and RNA research. Sample preparations a...
This dataset contains data files and analysis code associated with manuscript entitled "Parallel rev...
RNA modifications exist in all kingdom of life. Several different types of base or ribose modificati...
RNA A-to-I editing; carried out by the family of adenosine deaminase acting on RNA (ADAR) proteins, ...
The catalytically active component of ribosomes, rRNA, is long studied and heavily modified. However...
The covalent modification of RNA molecules is a pervasive feature of all classes of RNAs and has fun...
<p>The total RNA was extracted from FFPE peritumoral tissues using Qiagen RNA extraction kit for FFP...
My thesis focuses on the investigation and characterization of RNA modifications. RNA is post-transc...