GEOSX/GEOSX: v0.2.1-alpha

This is a pre-release created for the purpose of generating a DOI What's Changed Fix potential difference calculations in molar variables by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1228 Unit testing on Lassen - Laplace2D with serial direct solver by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1239 Compile mathpresso targets iff mathpresso option is requested. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1246 Improving lagrangian contact mechanics solver + LAI capabilities by @andrea-franceschini in https://github.com/GEOSX/GEOSX/pull/986 change workflow documentation by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1244 Provide docker solution to docker restriction by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1247 Adding an mesh tools python package for GEOSX by @cssherman in https://github.com/GEOSX/GEOSX/pull/1224 Improvements to EFEM solver. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1147 LC Spack Support by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1204 Fixed bug in averageOverSecondDim with 1D arrays. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1250 Implemented dispatch for mimetic inner product selection by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1190 WIP - Add Debug CUDA build to Travis CI by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1252 Updates to Phase-Field Fracture - Stress Decomposition and Nonlinear Degradation Functions by @andrembcosta in https://github.com/GEOSX/GEOSX/pull/1144 config-build works with Python3 by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1251 Fixed bug related to matching perforations to reservoir elements by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1206 Fixed bug linking to system tpls. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1265 Fix missing blob on GCP by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1276 Virtual Element Method by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1220 Travis Cuda Clang Debug Build by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1270 Fixing wrong buffer in test. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1281 Re-enable pinned memory. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1283 Update Hypre and CHAI TPLs by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1282 Fix to default destructor missing by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1268 Correct a typo: sparisty by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1271 Using clang-tidy to correct legacy namings by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1286 Removed Doxygen warnings on Quartz by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1293 Minor cameBack correction by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1294 fix incorrectly reverted LvArray submodule by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1295 Bugfix/sytuan/pangea build by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1253 Remove redundant member variables in LaplaceFEM solver by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1298 Apply renaming to function calls from Petsc LAI by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1300 Fix to boundedPlane to avoid missing some embedded elements. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1304 Replace std::string with string by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1301 Updating publications.rst by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1287 Fixed crash in SinglePhaseFVM with wells and fractures by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1306 Apply renaming to update functions in CompositionalMultiphaseFlowKernels by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1310 Modified well controls to match Intersect results by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1202 Update TPL by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1314 Update TPL by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1315 Update submodule BLT to v0.3.6 by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1316 Improve logs when product is not found in catalog. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1305 Python interface by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1068 Poroelasticity with embedded fractures by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1229 Adding Drucker-Prager plasticity model by @joshua-white in https://github.com/GEOSX/GEOSX/pull/974 Implement relative permeabilities with tables on device by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1277 Corbett/references and exceptions by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1318 Add hybrid FVM compositional multiphase solver by @francoishamon in https://github.com/GEOSX/GEOSX/pull/901 Updated Build Guide by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1332 Fix Debug-build compile fail on Lassen by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1337 Update CO2-brine model documentation by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1330 Enable uncrustify for Pangea by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1339 Fixed bug in the computation of the Peaceman index by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1341 Re-enable Doxygen on Travis and fix existing warnings by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1345 Update Caliper.rst by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1346 Process external components after core components. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1347 Fix VTK output to put plot files under output path by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1343 boomerAMG on GPU for SolidMechanicsLagrangianSSLE by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1054 Implemented Dead-Oil model working on device by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1313 Adding asyncronous kernel launching and restructuring the CommunicationTools routines to expose more async to allow for latency hiding by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1319 update TPLs for Pangea build by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1358 Kernels for poroelastic solvers by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1353 Implement CO2Brine model on GPU by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1325 Small fixes to tutorials. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1365 Changes for Summit. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1367 Fixed debug compilation on Lassen by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1368 Removing dead code + tiny cleanings by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1373 Reducing visibility of neighborRank in NeighborCommunicator by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1375 Low order acoustic wave equation by @mndiaye24 in https://github.com/GEOSX/GEOSX/pull/1269 Feature/borio/vem refactoring by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1288 Fixed compilation warning with clang+hypreGPU on Lassen by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1380 WIP - circular dependencies / object libraries build by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1352 Linear algebra cleanup by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1363 Update Caliper.rst by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1391 PVTPackage and PAMELA submodule names by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1396 Bugfixes for CUDA build (multiphase model kernel wrappers, HypreVector::extract) by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1397 Device Packing Optimization by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1382 Update host config to resolve Pangea build issue by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1395 Fix silo output issue #1186 by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1400 Bugfix/hypre lai by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1403 Parallel synchronization of new embedded surfaces. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1354 Wrong cast in PTP by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1404 Feature/wellbore mesh, Traction BC, convert {tensor input} by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1393 add missing internal wellbore mesh integrated test baselines by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1406 Adding a script to test for xml attribute coverage by @cssherman in https://github.com/GEOSX/GEOSX/pull/1102 Adding timestamp information required by visit to vtk files by @cssherman in https://github.com/GEOSX/GEOSX/pull/1407 Add LaplaceBase class by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1385 Add pygeosx_tools python package by @cssherman in https://github.com/GEOSX/GEOSX/pull/1362 Triaxial Driver by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1364 Cleanup of NeighborCommunicator by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1414 LvArray update. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1410 Changed how the finite element kernel objects are constructed. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1340 DofManager cleanup by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1412 Cleanup TractionBoundaryCondition by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1426 Corbett/hypre cuda fix by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1441 Adds support for hypre-cuda via spack. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1445 Fixed bug in compositional residual norm calculation with multiple regions by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1458 Consistify temperature units for CO2-brine input by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1459 Fixed the bug related to underscores in PAMELA region/surface names by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1460 Mgr cleanup + Poromechanics solvers cleanup by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1401 Fix Wedge node ordering by @AntoineMazuyer in https://github.com/GEOSX/GEOSX/pull/1454 Improved well error/warning messages by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1472 Output 4D fields in VTK by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1464 Fix bugs and add unit tests for ComponentMask by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1473 Implemented MGR recipes for flow solvers (hybrid FVM, wells) by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1471 Implemented CFL numbers in compositional solver by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1466 Change multiphase array layouts for CUDA builds by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1463 Refactor VEM classes to allow computations on GPU by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1419 VTK output improvements by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1484 Update index.rst by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1444 Proposal for type dispatch by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1487 Move volumeBalance to MultipahseporomechanicsKernel. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1488 Dynamic Time History Collection by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1360 CMake build cleanup by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1433 Specificy multiple input xml files from command line by @cssherman in https://github.com/GEOSX/GEOSX/pull/1465 Remove static_if by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1493 Cleanup/settgast/move ptp by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1498 Replace element type strings with enum by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1499 Force google's gsutil to use python3 by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1509 Creation of a CoupleSolidModel to handle Poro-Solid-Damage models. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1455 Updating tutorial step08 by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1511 Consider confining stress on SIF calculation and fracture propagation by @WuHuiLLNL in https://github.com/GEOSX/GEOSX/pull/1486 Moved resizeFields to registerDataOnMesh in compositional solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1512 Docs for Analytical Verification of Drucker-Prager Model by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1474 Add missing & Remove duplicated files in CMakeLists.txt by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1490 Add type check for coupledSolid by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1518 Fix schema generation crash + minor bugfixes by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1519 XML Redundancy Tool by @cssherman in https://github.com/GEOSX/GEOSX/pull/1497 Add new cluster target and clean CI by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1467 Remove unused TPLs by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1527 Changed default m_component value to -1 in FieldSpecificationBase to … by @jafranc in https://github.com/GEOSX/GEOSX/pull/1500 Correct some XMLs by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1526 Remove warning by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1530 Update solid model documentation by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1329 Refactor PAMELA field import by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1532 Docs for Solving Wellbore Problems with Poroplastic Solver by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1475 Fixed bug in total density for surface condition injection rate by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1536 Minor doc fixes by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1535 Prevent VTK counter FPE by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1540 [Docs] coupled solid documentation by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1539 Fix VTK crash with empty subregions by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1543 Use of CompressibleSolid - Stencils refactoring - Transmissibility update by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1311 Updated LvArray. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1551 Implement Black-Oil model on GPU by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1537 Multiphase fluid model cleanup by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1554 Fix for reference porosity import by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1557 Elastic Orthotropic constitutive model by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1323 Bugfix for #1550 by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1556 Implemented time-dependent well rate and bhp tables by @tang39 in https://github.com/GEOSX/GEOSX/pull/1468 Doc for cased wellbore problem by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1542 Fix #1524 by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1558 Change to TotalEnergies by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1562 Tutorial updates by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1538 Added calls to reserve in transmissibilities precomputation by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1572 Move xml files of wellbore problems to benchmark folders by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1574 Documentation for docker development. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1567 Doc for deviated elastic wellbore by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1571 Correct wrong markdown formatting by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1577 Docs/castelletto1/update publications by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1578 Add version output by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1581 Proppant solver refactoring by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1559 Improve version header generation by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1583 Projection EDFM by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1565 Add Ninja job pool limit options by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1590 Fixed negative cell volume with reverseZ on CPG by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1589 Poromechanics kernels refactoring by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1596 Use {fmt} for message formatting by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1568 update TPL in Pangea host config by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1602 Adding Cam-Clay/Delft-Egg Plasticity Models by @shabnamjs in https://github.com/GEOSX/GEOSX/pull/1336 Xcode build fix by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1582 Add TPL note to QuickStart by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1605 [Doc] Verification example with MCC plasticity model by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1575 [Doc] advanced example for simulating proppant slot test by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1573 [Doc] Fixed some inconsistencies and misprints in the updated tutorial by @mkhait in https://github.com/GEOSX/GEOSX/pull/1591 Keep neighbors with one-way ghost exchange by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1599 Updating the input xml parsing, adding two xml unit tests by @cssherman in https://github.com/GEOSX/GEOSX/pull/1580 Correct some XMLs by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1608 Disabled cross-flow when well is shut down by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1601 Doc for deviated PoroElastic wellbore by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1585 Fix broken links in tutorial examples by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1614 Add pygeosx tutorials and update advanced xml features by @cssherman in https://github.com/GEOSX/GEOSX/pull/1609 Implemented contact relation update classes by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1576 Bugfixes for time history functionality. by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1612 update copyright and author on rtd configuration file by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1618 Allow nested XML includes by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1617 Porosity initialization by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1595 Automatic allocation of compound constitutive relations by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1584 Adding a Pecan CPU target alongside the GPU one. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1625 Remove memory leak when creating already created HypreVector. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1628 restructure relationship between tests, examples, benchmarks by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1569 Correct handling of relative paths with multiple input files by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1634 Improved/added table relative permeability/capillary pressure by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1633 Update "Included Files" section of User Guide by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1621 Add MPI barrier after creating composite input XML by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1639 [Doc] advanced example of Kirsch wellbore problem by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1635 [Doc] Verification example of a single fracture under shear compression by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1615 [Doc] KGD example with toughness dominated by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1610 Implemented aquifer boundary condition by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1561 Repairing a few XML files in the repo by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1641 Adding features for Wellbore meshing by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1424 Added aquifer documentation by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1648 XML reorganization # 2 by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1643 Linear combination of mass balance equations for compositional multiphase flow solvers by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1646 Update Brew version for MPI by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1658 Refactored SourceFlux application in compositional solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1654 Add PR and build numbers to deployment locations by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1665 Repair/remove dead symlinks. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1664 [Docs] Example of KGD fracture with viscosity dominated regime by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1642 Update TPL for Pangea build by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1649 Structure of the wave propagator by @mndiaye24 in https://github.com/GEOSX/GEOSX/pull/1470 Unify interfaces of FEM and VEM classes by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1489 [docs] on win install v0 by @jafranc in https://github.com/GEOSX/GEOSX/pull/1622 [Doc] advanced example of intersected fractures by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1651 Remove duplicated SolverBase::getDiscretization by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1667 Fix ReadTheDocs builds by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1666 Fixed division by zero in getHistoryMetadata by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1674 Feature/castelletto1/lai unit testing by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1669 Implemented hydrostatic equilibrium initial condition by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1607 [Doc] extend sneddon problem to different solvers by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1659 Add solid internal energy. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1660 Linear algebra changes by @klevzof