MarcSaric/docker-stacks: Added Rsubread

bbfrederick/rapidtide: Version 2.0alpha29 - 6/1/21 Checkpoint

Blaise deB Frederick
Taylor Salo
Daniel M. Drucker

June 2021

(Docker) Fixed some problems with task dispatch and container versioning. (rapidtide) Pulled a numbe...

rlatex: Versioned docker image with R and minimal LaTeX and pandoc configuration

Thierry Onkelinx

March 2019

rlatex provides a versioned docker image with a minimal LaTeX and pandoc configuratio

bbfrederick/rapidtide: Version 2.2.1 - 3/16/22 checkpoint and bugfix

Blaise deB Frederick
Taylor Salo
Daniel M. Drucker

March 2022

(histtc, histnifti) Harmonized options between the programs. (Docker) Updated Dockerfile to fix a bu...

MarcSaric/docker-stacks: Upgrade to R 3.6.2

Peter Parente
Marc Saric
Min RK
jakirkham
Romain
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Michael Delgado
Richard Darst
Bas Nijholt
Ellis Valentiner
Eric Dill
Carol Willing
Chia-liang Kao
Troels Schwarz-Linnet
borregore
Mark
Marius van Niekerk
Wei-Ting Kuo
José Bayoán Santiago Calderón
J Forde
Brett Randall
James Brock
Christian Mesh
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch

May 2020

Upgraded to most recent version of upstream using R 3.6.2. Added docker containers for the GDC TCGA ...

MarcSaric/docker-stacks: Upgrade to R 3.5.1

Peter Parente
Marc Saric
Min RK
jakirkham
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Michael Delgado
Bas Nijholt
Ellis Valentiner
Eric Dill
Carol Willing
Romain
Chia-liang Kao
Troels Schwarz-Linnet
borregore
Marius van Niekerk
Wei-Ting Kuo
J Forde
Brett Randall
Richard Darst
Christian Mesh
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch
Chris Zubak-Skees
Braden
Alan Du

May 2019

Upgraded the jupyter-notebook from upstream. Fixed a few build issues, which are due to the upgraded...

MarcSaric/docker-stacks: deseq2-biocparallel-notebook

Peter Parente
Marc Saric
Min RK
jakirkham
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Bas Nijholt
Ellis Valentiner
Carol Willing
Marius van Niekerk
Wei-Ting Kuo
Troels Schwarz-Linnet
J Forde
Christian Mesh
Chia-liang Kao
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch
Dan Allan
Stanislav Khotinok
Priya Seth
Jonathan Terhorst
Giovanni Lanzani
Gino Bustelo
Chris Zubak-Skees
Braden
Alan Du

December 2018

Added an overlay notebook for DESeq2 and the biocparallel library to speed things up a bit

MarcSaric/docker-stacks: First release

Peter Parente
Min RK
Marc Saric
jakirkham
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Bas Nijholt
Ellis Valentiner
Carol Willing
Marius van Niekerk
Wei-Ting Kuo
Troels Schwarz-Linnet
J Forde
Christian Mesh
Chia-liang Kao
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch
Dan Allan
Stanislav Khotinok
Priya Seth
Jonathan Terhorst
Giovanni Lanzani
Gino Bustelo
Chris Zubak-Skees
Braden
Alan Du

October 2018

Tagging current state of all notebooks as forked from jupyter/docker-stacks or self-build on that ba...

MarcSaric/docker-stacks: goseq package added

Peter Parente
Marc Saric
Min RK
jakirkham
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Bas Nijholt
Ellis Valentiner
Carol Willing
Marius van Niekerk
Wei-Ting Kuo
Troels Schwarz-Linnet
J Forde
Christian Mesh
Chia-liang Kao
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch
Dan Allan
Stanislav Khotinok
Priya Seth
Jonathan Terhorst
Giovanni Lanzani
Gino Bustelo
Chris Zubak-Skees
Braden
Alan Du

April 2019

Added goseq and dependent packages to the deseq2_biocparallel notebook. Last tag prior to upgrade to...

blobtoolkit/blobtoolkit: 3.1.9

Richard Challis
Michael Paulini

May 2022

Commits 0f3b81d: add rsync docker dependency (Richard Challis) e47ddda: bump UI/API version (Richar...

rocker-versioned: Versioned stack of Docker images for R

Carl Boettiger
Dirk Eddelbuettel

December 2017

rocker-versioned provides Dockerfiles for versioned instances of R. The rocker-versioned stack incl...

rickhelmus/patRoon: Maintenance release

rickhelmus
Rick Helmus

October 2020

This release fixes several bugs, incorporates small improvements and brings RStudio based Docker ima...

btschwertfeger/BiasAdjustCXX: Release v1.8.1

Benjamin T. Schwertfeger

March 2023

Added a Dockerfile to create and publish an image to apply the BiasAdjustCXX tool within a Docker co...

jpvantassel/swbatch: v0.3.1

Joseph Vantassel

May 2022

In this release ✨ Add Dockerfile and containerize application. Add all examples from the SWinve...

nuest/rocker-win: Proof on concept for R in Windows-based Docker Containers

Nüst, Daniel

December 2019

Proof of concept for running R in Windows Containers with Docker for Windows. It provides selected R...

bbfrederick/capcalc: Version 1.2.0 (8/22/22) - Cumulative update including compatibility with rapidtide 2.x

Blaise deB Frederick
Daniel M. Drucker

August 2022

(Docker) Added Docker compatibility (package) Updated to match the current version of rapidtide. (pa...

bbfrederick/rapidtide: Version 2.0alpha29 - 6/1/21 Checkpoint

Blaise deB Frederick
Taylor Salo
Daniel M. Drucker

June 2021

(Docker) Fixed some problems with task dispatch and container versioning. (rapidtide) Pulled a numbe...

rlatex: Versioned docker image with R and minimal LaTeX and pandoc configuration

Thierry Onkelinx

March 2019

rlatex provides a versioned docker image with a minimal LaTeX and pandoc configuratio

bbfrederick/rapidtide: Version 2.2.1 - 3/16/22 checkpoint and bugfix

Blaise deB Frederick
Taylor Salo
Daniel M. Drucker

March 2022

(histtc, histnifti) Harmonized options between the programs. (Docker) Updated Dockerfile to fix a bu...

MarcSaric/docker-stacks: Upgrade to R 3.6.2

Peter Parente
Marc Saric
Min RK
jakirkham
Romain
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Michael Delgado
Richard Darst
Bas Nijholt
Ellis Valentiner
Eric Dill
Carol Willing
Chia-liang Kao
Troels Schwarz-Linnet
borregore
Mark
Marius van Niekerk
Wei-Ting Kuo
José Bayoán Santiago Calderón
J Forde
Brett Randall
James Brock
Christian Mesh
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch

May 2020

Upgraded to most recent version of upstream using R 3.6.2. Added docker containers for the GDC TCGA ...

MarcSaric/docker-stacks: Upgrade to R 3.5.1

Peter Parente
Marc Saric
Min RK
jakirkham
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Michael Delgado
Bas Nijholt
Ellis Valentiner
Eric Dill
Carol Willing
Romain
Chia-liang Kao
Troels Schwarz-Linnet
borregore
Marius van Niekerk
Wei-Ting Kuo
J Forde
Brett Randall
Richard Darst
Christian Mesh
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch
Chris Zubak-Skees
Braden
Alan Du

May 2019

Upgraded the jupyter-notebook from upstream. Fixed a few build issues, which are due to the upgraded...

MarcSaric/docker-stacks: deseq2-biocparallel-notebook

Peter Parente
Marc Saric
Min RK
jakirkham
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Bas Nijholt
Ellis Valentiner
Carol Willing
Marius van Niekerk
Wei-Ting Kuo
Troels Schwarz-Linnet
J Forde
Christian Mesh
Chia-liang Kao
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch
Dan Allan
Stanislav Khotinok
Priya Seth
Jonathan Terhorst
Giovanni Lanzani
Gino Bustelo
Chris Zubak-Skees
Braden
Alan Du

December 2018

Added an overlay notebook for DESeq2 and the biocparallel library to speed things up a bit

MarcSaric/docker-stacks: First release

Peter Parente
Min RK
Marc Saric
jakirkham
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Bas Nijholt
Ellis Valentiner
Carol Willing
Marius van Niekerk
Wei-Ting Kuo
Troels Schwarz-Linnet
J Forde
Christian Mesh
Chia-liang Kao
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch
Dan Allan
Stanislav Khotinok
Priya Seth
Jonathan Terhorst
Giovanni Lanzani
Gino Bustelo
Chris Zubak-Skees
Braden
Alan Du

October 2018

Tagging current state of all notebooks as forked from jupyter/docker-stacks or self-build on that ba...

MarcSaric/docker-stacks: goseq package added

Peter Parente
Marc Saric
Min RK
jakirkham
Graham Dumpleton
Kyle Kelley
Justin Tyberg
Michael Poplavski
Bas Nijholt
Ellis Valentiner
Carol Willing
Marius van Niekerk
Wei-Ting Kuo
Troels Schwarz-Linnet
J Forde
Christian Mesh
Chia-liang Kao
Stephen Larson
naveen marri
ilsiyar-gaynutdinov-ibm
Carl Osterwisch
Dan Allan
Stanislav Khotinok
Priya Seth
Jonathan Terhorst
Giovanni Lanzani
Gino Bustelo
Chris Zubak-Skees
Braden
Alan Du

April 2019

Added goseq and dependent packages to the deseq2_biocparallel notebook. Last tag prior to upgrade to...

blobtoolkit/blobtoolkit: 3.1.9

Richard Challis
Michael Paulini

May 2022

Commits 0f3b81d: add rsync docker dependency (Richard Challis) e47ddda: bump UI/API version (Richar...

rocker-versioned: Versioned stack of Docker images for R

Carl Boettiger
Dirk Eddelbuettel

December 2017

rocker-versioned provides Dockerfiles for versioned instances of R. The rocker-versioned stack incl...

rickhelmus/patRoon: Maintenance release

rickhelmus
Rick Helmus

October 2020

This release fixes several bugs, incorporates small improvements and brings RStudio based Docker ima...

btschwertfeger/BiasAdjustCXX: Release v1.8.1

Benjamin T. Schwertfeger

March 2023

Added a Dockerfile to create and publish an image to apply the BiasAdjustCXX tool within a Docker co...

jpvantassel/swbatch: v0.3.1

Joseph Vantassel

May 2022

In this release ✨ Add Dockerfile and containerize application. Add all examples from the SWinve...

nuest/rocker-win: Proof on concept for R in Windows-based Docker Containers

Nüst, Daniel

December 2019

Proof of concept for running R in Windows Containers with Docker for Windows. It provides selected R...

bbfrederick/capcalc: Version 1.2.0 (8/22/22) - Cumulative update including compatibility with rapidtide 2.x

Blaise deB Frederick
Daniel M. Drucker

August 2022

(Docker) Added Docker compatibility (package) Updated to match the current version of rapidtide. (pa...

bbfrederick/rapidtide: Version 2.0alpha29 - 6/1/21 Checkpoint

Blaise deB Frederick
Taylor Salo
Daniel M. Drucker

June 2021

(Docker) Fixed some problems with task dispatch and container versioning. (rapidtide) Pulled a numbe...

rlatex: Versioned docker image with R and minimal LaTeX and pandoc configuration

Thierry Onkelinx

March 2019

rlatex provides a versioned docker image with a minimal LaTeX and pandoc configuratio

bbfrederick/rapidtide: Version 2.2.1 - 3/16/22 checkpoint and bugfix

Blaise deB Frederick
Taylor Salo
Daniel M. Drucker

March 2022

(histtc, histnifti) Harmonized options between the programs. (Docker) Updated Dockerfile to fix a bu...

MarcSaric/docker-stacks: Added Rsubread

Abstract

Extracted data

MarcSaric/docker-stacks: Added Rsubread

Abstract

Extracted data

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