pymedphys/pymedphys: v0.31.0

"Stable" API changes (Won't truly be stable until after a 1.0.0 release) Critical bug fixes Fixed bug where pymedphys dicom anonymise and pymedphys.dicom.anonymise would not anonymise nested tags. Thanks @sjswerdloff for finding and fixing #920. Breaking changes Removed the --publish option from CLI pymedphys dev docs. Moved pymedphys logfile orchestration to pymedphys trf orchestrate New features pymedphys.zenodo_data_paths has a new optional parameter filenames that can be used to only download some files. pymedphys.data_path has a new optional parameter hash_filepath which can be used to provide a custom hash record. Added usage warning to the MU Density GUI. Deprecations pymedphys.read_trf has been replaced with pymedphys.trf.read. The old API is still available, but will be removed in a future version. Bug fixes Cache data downloads now also retry when a ConnectionResetError occurs. Beta API changes New features A new pymedphys.beta module created. This is intended to allow a section of the API to be exposed and iterated on but having breaking changes not induce a major version bump (when PyMedPhys goes to v1.0.0+) Added pymedphys.beta.trf.identify to allow the usage of Mosaiq to identify a trf logfile. Experimental API changes Breaking changes Instances of labs has been changed to experimental. This affects all imports from the labs and the CLI usage. Bug fixes Fixed issue with Pinnacle Export Tool crashing when an image is missing from the archive