griffithlab/pVACtools: 1.5.9

This is a hotfix release. It fixes the following issues: Some variant consequences supported by pVACseq would not actually result in a amino acid change (e.g., inframe_insertion&incomplete_terminal_codon_variant). These types of variants were not being filtered out correctly and would cause an error when trying to create the peptide fasta sequences. This issue has been fixed and these variants are now being filtered out upstream. Running pVACseq on a non-human VCF would cause an error in the top score filter since the transcript identifiers would not match the expected format. This has been fixed and the top score filter now supports non-human transcripts. There was an error in setting up the standalone pvacfuse generate_protein_fasta command which would result in an error when trying to run this command. This has now been fixed