Publication date
January 2020
DOIAbstract
Changed Bumped fastobo to v0.7.0, switching parser implementation to use multi-threading in order to speedup the parser process
Changed Bumped fastobo to v0.7.0, switching parser implementation to use multi-threading in order to speedup the parser process
Added threads parameter to Ontology constructor to control the number of threads used by parsers su...
protfasta is a simple, robust parser for working with FASTA files. It is pure python and has no exte...
Fixed replaced_by and consider attributes not being extracted from RDF/XML documents on missing RDF...
Added Explicit support for Python 3.11. ### Changed Bumped fastobo dependency to v0.12.2. Bumped ch...
Switch to coroutines for Obo parsing Add support for Python 3.6 Fix several bugs Embed custom materi...
Fixed Handling of some clauses in FastoboParser. OboSerializer occasionaly missing lines between te...
Added Deprecation warnings for the retrieval of relationships via indexing, to be deprecated in v3....
Increased multiprocessing support Made all pronto types pickable (protocol >=2 required) Fix many pe...
Fixed Serialization of is_class_level properties with fastobo-based serializers (#178). Parsing of ...
Changed Dropped support for Python earlier than 3.6. Brand new data model that follow the OBO 1.4 o...
Release v0.8.0 Allow creating an Ontology directly from a stream Allow data-based parser discovery ...
What's Changed Optimise PMNS_Deco and PMNS_LIV by @joaoabcoelho in https://github.com/joaoabcoelho/...
Fixed Issues with typedef serialization in FastoboSerializer. Ontology.create_term and Ontology....
Added Setters for the holds_over_chain and equivalent_to_chain properties of Relationship objects. ...
Added Explicit support for Python 3.8. Support for Windows-style line endings (#53
Added threads parameter to Ontology constructor to control the number of threads used by parsers su...
protfasta is a simple, robust parser for working with FASTA files. It is pure python and has no exte...
Fixed replaced_by and consider attributes not being extracted from RDF/XML documents on missing RDF...
Added Explicit support for Python 3.11. ### Changed Bumped fastobo dependency to v0.12.2. Bumped ch...
Switch to coroutines for Obo parsing Add support for Python 3.6 Fix several bugs Embed custom materi...
Fixed Handling of some clauses in FastoboParser. OboSerializer occasionaly missing lines between te...
Added Deprecation warnings for the retrieval of relationships via indexing, to be deprecated in v3....
Increased multiprocessing support Made all pronto types pickable (protocol >=2 required) Fix many pe...
Fixed Serialization of is_class_level properties with fastobo-based serializers (#178). Parsing of ...
Changed Dropped support for Python earlier than 3.6. Brand new data model that follow the OBO 1.4 o...
Release v0.8.0 Allow creating an Ontology directly from a stream Allow data-based parser discovery ...
What's Changed Optimise PMNS_Deco and PMNS_LIV by @joaoabcoelho in https://github.com/joaoabcoelho/...
Fixed Issues with typedef serialization in FastoboSerializer. Ontology.create_term and Ontology....
Added Setters for the holds_over_chain and equivalent_to_chain properties of Relationship objects. ...
Added Explicit support for Python 3.8. Support for Windows-style line endings (#53
Added threads parameter to Ontology constructor to control the number of threads used by parsers su...
protfasta is a simple, robust parser for working with FASTA files. It is pure python and has no exte...
Fixed replaced_by and consider attributes not being extracted from RDF/XML documents on missing RDF...
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