Add strand info to uc file after dereplication. Add info about expected errors (ee) to FASTA files with fastq_filter and fastq_mergepairs commands if option -fastq_eeout or -eeout is specified. Delete unnecessary autotool files
1 seqTools package The seqTools package provides functionality for collecting and analyzing qual-ity...
Fix Illegal instruction faults when running the precompiled binaries on some systems
I bumped versions here to illustrate that UFITS has changed a little under the hood, now requires at...
Added --search_exact, --fastx_mask and --fastq_convert commands. Changed most commands to read FASTQ...
Added the --fastq_mergepairs command and associated options. This command has not been tested well y...
Parallelized and improved merging of paired-end reads and adjusted some defaults. Removed progress i...
VSEARCH 1.0.13 fixes a memory allocation problem with multiple sequence alignments with clustered se...
Fixed a bug causing a segmentation fault when running usearch_global with an empty query sequence. A...
Added fastx_filter command and options fastq_truncee and fastq_maxlen. Allowed minwordmatches down t...
Fixed incorrect abundance output from fastx_filter and fastq_filter when relabelling
Should fix bug in aligned sequences produced with --fastapairs and --userout (qrow, trow) options (i...
Fixed memory leak and a bug in score computation in fastq_mergepairs, and improved speed
Several new commands and option added, including subsampling and fastq file processing. New autotool...
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, a...
RNAseq data from Vespula vulgaris nests sampled in the field in Lincoln, Canterbury, New Zealand in ...
1 seqTools package The seqTools package provides functionality for collecting and analyzing qual-ity...
Fix Illegal instruction faults when running the precompiled binaries on some systems
I bumped versions here to illustrate that UFITS has changed a little under the hood, now requires at...
Added --search_exact, --fastx_mask and --fastq_convert commands. Changed most commands to read FASTQ...
Added the --fastq_mergepairs command and associated options. This command has not been tested well y...
Parallelized and improved merging of paired-end reads and adjusted some defaults. Removed progress i...
VSEARCH 1.0.13 fixes a memory allocation problem with multiple sequence alignments with clustered se...
Fixed a bug causing a segmentation fault when running usearch_global with an empty query sequence. A...
Added fastx_filter command and options fastq_truncee and fastq_maxlen. Allowed minwordmatches down t...
Fixed incorrect abundance output from fastx_filter and fastq_filter when relabelling
Should fix bug in aligned sequences produced with --fastapairs and --userout (qrow, trow) options (i...
Fixed memory leak and a bug in score computation in fastq_mergepairs, and improved speed
Several new commands and option added, including subsampling and fastq file processing. New autotool...
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, a...
RNAseq data from Vespula vulgaris nests sampled in the field in Lincoln, Canterbury, New Zealand in ...
1 seqTools package The seqTools package provides functionality for collecting and analyzing qual-ity...
Fix Illegal instruction faults when running the precompiled binaries on some systems
I bumped versions here to illustrate that UFITS has changed a little under the hood, now requires at...
DOI
Add to ORKG