Added --search_exact, --fastx_mask and --fastq_convert commands. Changed most commands to read FASTQ input files as well as FASTA files. Modified --fastx_revcomp and --fastx_subsample to also write FASTQ files
Added relabelling options for shuffle and added xsize option for several commands
A large and ever increasing quantity of high throughput sequencing (HTS) data is stored in FASTQ fil...
Should fix bug in aligned sequences produced with --fastapairs and --userout (qrow, trow) options (i...
Parallelized and improved merging of paired-end reads and adjusted some defaults. Removed progress i...
Added fastx_filter command and options fastq_truncee and fastq_maxlen. Allowed minwordmatches down t...
Added the --fastq_mergepairs command and associated options. This command has not been tested well y...
Several new commands and option added, including subsampling and fastq file processing. New autotool...
Add strand info to uc file after dereplication. Add info about expected errors (ee) to FASTA files w...
VSEARCH 1.0.13 fixes a memory allocation problem with multiple sequence alignments with clustered se...
Fixed incorrect abundance output from fastx_filter and fastq_filter when relabelling
Fixed memory leak and a bug in score computation in fastq_mergepairs, and improved speed
Fixed a bug causing a segmentation fault when running usearch_global with an empty query sequence. A...
Fix bug with all commands involving searches in large datasets (>4Gbp). Fix format of help text
The following files are sets of raw fastq sequences to be used to follow along with tutorials in var...
The raw FASTQ files produced in the study. The files are compressed using gzip and collected to a ta...
Added relabelling options for shuffle and added xsize option for several commands
A large and ever increasing quantity of high throughput sequencing (HTS) data is stored in FASTQ fil...
Should fix bug in aligned sequences produced with --fastapairs and --userout (qrow, trow) options (i...
Parallelized and improved merging of paired-end reads and adjusted some defaults. Removed progress i...
Added fastx_filter command and options fastq_truncee and fastq_maxlen. Allowed minwordmatches down t...
Added the --fastq_mergepairs command and associated options. This command has not been tested well y...
Several new commands and option added, including subsampling and fastq file processing. New autotool...
Add strand info to uc file after dereplication. Add info about expected errors (ee) to FASTA files w...
VSEARCH 1.0.13 fixes a memory allocation problem with multiple sequence alignments with clustered se...
Fixed incorrect abundance output from fastx_filter and fastq_filter when relabelling
Fixed memory leak and a bug in score computation in fastq_mergepairs, and improved speed
Fixed a bug causing a segmentation fault when running usearch_global with an empty query sequence. A...
Fix bug with all commands involving searches in large datasets (>4Gbp). Fix format of help text
The following files are sets of raw fastq sequences to be used to follow along with tutorials in var...
The raw FASTQ files produced in the study. The files are compressed using gzip and collected to a ta...
Added relabelling options for shuffle and added xsize option for several commands
A large and ever increasing quantity of high throughput sequencing (HTS) data is stored in FASTQ fil...
Should fix bug in aligned sequences produced with --fastapairs and --userout (qrow, trow) options (i...
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