Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues

Biological Study Using 3-D Tissue Cytometry

So, Peter T. C.
Gilbert, Richard
Kwon, Hyuk-Sang
Huang, Hayden

January 2010

3-D tissue cytometry has been successfully developed to optimize biological specimen throughput allo...

Imaging Mass Cytometry Images (APP1) from: A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially resolved tissue phenotyping at single-cell resolution.

Bortolomeazzi, Michele
Montorsi, Lucia
Temelkovski, Damjan
Keddar, Mohamed Reda
Acha-Sagredo, Amelia
Pitcher, Michael J
Basso, Gianluca
Laghi, Luigi
Rodriguez-Justo, Manuel
Spencer, Jo
Ciccarelli, Francesca D

October 2021

Four µm-thick sections were cut from the APP1 FFPE block with a microtome and used for staining with...

High throughput three-dimensional tissue cytometry

Kwon, Hyuk-Sang, 1971-

January 2007

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Mechanical Engineering, 2007.Includ...

Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues

Kuett Laura
Raúl Catena
Alaz Özcan
Alex Plüss
IMAXT Consortium
Peter Schraml
Holger Moch
Natalie de Souza
Bernd Bodenmiller

December 2021

Data for the four 3D IMC models supporting the publication " Three-dimensional imaging mass cytometr...

Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment

Kuett, Laura
Catena, Raúl
Özcan, Alaz
Plüss, Alex
Schraml, Peter
Moch, Holger
de Souza, Natalie
Bodenmiller, Bernd
Cancer Grand Challenges IMAXT Consortium

January 2022

A holistic understanding of tissue and organ structure and function requires the detection of molecu...

Highly multiplexed molecular and cellular mapping of breast cancer tissue in three dimensions using mass tomography

Catena, Raúl
Özcan, Alaz
Kütt, Laura
Plüss, Alex
Schraml, Peter
Moch, Holger
Bodenmiller, Bernd

January 2020

A holistic understanding of tissue and organ structures and their functions requires the detection o...

Multiplexed imaging mass cytometry analysis characterizes the vascular niche in pancreatic cancer

Jonathan H. Sussman
Nathalia Kim
Daniel Traum
Takeshi Katsuda
Samantha B. Kemp
Benjamin M. Kahn
Devora Delman
Gregory Beatty
Klaus H. Kaestner
Amber L. Simpson
Ben Z. Stanger

July 2023

All data supporting the publication: "Multiplexed imaging mass cytometry analysis characterizes the ...

DNA-barcoded signal amplification for imaging mass cytometry enables sensitive and highly multiplexed tissue imaging

Tsuyoshi Hosogane
Ruben Casanova
Bernd Bodenmiller

July 2023

Tiff images, single cell data, and cell masks for the publication "DNA-barcoded signal amplification...

Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry

Schulz, D (via Mendeley Data)

December 2017

This dataset contains the raw data images, mask files for single cell segmentation, meta data as wel...

A Novel Process for H&E, Immunofluorescence, and Imaging Mass Cytometry on a Single Slide with a Concise Analytics Pipeline

Marlin, M. Caleb
Stephens, Tayte
Wright, Christian
Smith, Miles
Wright, Kyle
Guthridge, Joel M.

June 2023

Imaging Mass Cytometry (IMC) is a powerful spatial technology that utilizes Cytometry Time of Flight...

Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma

Xu Xiao
Qian Guo
Chuanliang Cui
Yating Lin
Lei Zhang
Xin Ding
Qiyuan Li
Minshu Wang
Wenxian Yang
Yan Kong
Rongshan Yu

July 2022

- melanoma_IMC_data.zip The zip file contains the raw IMC images (in the raw_tiff folder) and corre...

THREE-DIMENSIONAL TISSUE CYTOMETER BASED ON HIGH-SPEED MULTIPHOTON MICROSCOPY

Kim, KH
Ragan, T
Previte, MJR
Bahlmann, K
Harley, BA
Wiktor-Brown, DA
Stitt, MS
Hendricks, CA
Almeida, KH
Engelward, BP
So, PTC

Image cytometry technology has been extended to 3D based on high-speed multiphoton microscopy. This ...

Mass spectrometry imaging of 3D tissue models

Russo, C.
Lewis, E.
Flint, L.
Clench, M.
Russo, C.
Lewis, E.
Flint, L.
Clench, M.

January 2018

A 3D cell culture is an artificially created environment in which cells are permitted to grow/intera...

Imaging Mass Cytometry Raw Image Files-Multiple Myeloma

Maryam Setayesh (16813788)

August 2023

Imaging mass cytometry data of multiple myeloma bone marrow and peripheral blood malignant plasma, i...

Raw images and single cell masks associated with "Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma"

Xu Xiao
Qian Guo
Chuanliang Cui
Yating Lin
Lei Zhang
Xin Ding
Qiyuan Li
Minshu Wang
Wenxian Yang
Yan Kong
Rongshan Yu

July 2022

This dataset contains the raw IMC images (in the raw_tiff folder) and corresponding single cell mask...

Biological Study Using 3-D Tissue Cytometry

So, Peter T. C.
Gilbert, Richard
Kwon, Hyuk-Sang
Huang, Hayden

January 2010

3-D tissue cytometry has been successfully developed to optimize biological specimen throughput allo...

Imaging Mass Cytometry Images (APP1) from: A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially resolved tissue phenotyping at single-cell resolution.

Bortolomeazzi, Michele
Montorsi, Lucia
Temelkovski, Damjan
Keddar, Mohamed Reda
Acha-Sagredo, Amelia
Pitcher, Michael J
Basso, Gianluca
Laghi, Luigi
Rodriguez-Justo, Manuel
Spencer, Jo
Ciccarelli, Francesca D

October 2021

Four µm-thick sections were cut from the APP1 FFPE block with a microtome and used for staining with...

High throughput three-dimensional tissue cytometry

Kwon, Hyuk-Sang, 1971-

January 2007

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Mechanical Engineering, 2007.Includ...

Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues

Kuett Laura
Raúl Catena
Alaz Özcan
Alex Plüss
IMAXT Consortium
Peter Schraml
Holger Moch
Natalie de Souza
Bernd Bodenmiller

December 2021

Data for the four 3D IMC models supporting the publication " Three-dimensional imaging mass cytometr...

Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment

Kuett, Laura
Catena, Raúl
Özcan, Alaz
Plüss, Alex
Schraml, Peter
Moch, Holger
de Souza, Natalie
Bodenmiller, Bernd
Cancer Grand Challenges IMAXT Consortium

January 2022

A holistic understanding of tissue and organ structure and function requires the detection of molecu...

Highly multiplexed molecular and cellular mapping of breast cancer tissue in three dimensions using mass tomography

Catena, Raúl
Özcan, Alaz
Kütt, Laura
Plüss, Alex
Schraml, Peter
Moch, Holger
Bodenmiller, Bernd

January 2020

A holistic understanding of tissue and organ structures and their functions requires the detection o...

Multiplexed imaging mass cytometry analysis characterizes the vascular niche in pancreatic cancer

Jonathan H. Sussman
Nathalia Kim
Daniel Traum
Takeshi Katsuda
Samantha B. Kemp
Benjamin M. Kahn
Devora Delman
Gregory Beatty
Klaus H. Kaestner
Amber L. Simpson
Ben Z. Stanger

July 2023

All data supporting the publication: "Multiplexed imaging mass cytometry analysis characterizes the ...

DNA-barcoded signal amplification for imaging mass cytometry enables sensitive and highly multiplexed tissue imaging

Tsuyoshi Hosogane
Ruben Casanova
Bernd Bodenmiller

July 2023

Tiff images, single cell data, and cell masks for the publication "DNA-barcoded signal amplification...

Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry

Schulz, D (via Mendeley Data)

December 2017

This dataset contains the raw data images, mask files for single cell segmentation, meta data as wel...

A Novel Process for H&E, Immunofluorescence, and Imaging Mass Cytometry on a Single Slide with a Concise Analytics Pipeline

Marlin, M. Caleb
Stephens, Tayte
Wright, Christian
Smith, Miles
Wright, Kyle
Guthridge, Joel M.

June 2023

Imaging Mass Cytometry (IMC) is a powerful spatial technology that utilizes Cytometry Time of Flight...

Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma

Xu Xiao
Qian Guo
Chuanliang Cui
Yating Lin
Lei Zhang
Xin Ding
Qiyuan Li
Minshu Wang
Wenxian Yang
Yan Kong
Rongshan Yu

July 2022

- melanoma_IMC_data.zip The zip file contains the raw IMC images (in the raw_tiff folder) and corre...

THREE-DIMENSIONAL TISSUE CYTOMETER BASED ON HIGH-SPEED MULTIPHOTON MICROSCOPY

Kim, KH
Ragan, T
Previte, MJR
Bahlmann, K
Harley, BA
Wiktor-Brown, DA
Stitt, MS
Hendricks, CA
Almeida, KH
Engelward, BP
So, PTC

Image cytometry technology has been extended to 3D based on high-speed multiphoton microscopy. This ...

Mass spectrometry imaging of 3D tissue models

Russo, C.
Lewis, E.
Flint, L.
Clench, M.
Russo, C.
Lewis, E.
Flint, L.
Clench, M.

January 2018

A 3D cell culture is an artificially created environment in which cells are permitted to grow/intera...

Imaging Mass Cytometry Raw Image Files-Multiple Myeloma

Maryam Setayesh (16813788)

August 2023

Imaging mass cytometry data of multiple myeloma bone marrow and peripheral blood malignant plasma, i...

Raw images and single cell masks associated with "Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma"

Xu Xiao
Qian Guo
Chuanliang Cui
Yating Lin
Lei Zhang
Xin Ding
Qiyuan Li
Minshu Wang
Wenxian Yang
Yan Kong
Rongshan Yu

July 2022

This dataset contains the raw IMC images (in the raw_tiff folder) and corresponding single cell mask...

Biological Study Using 3-D Tissue Cytometry

So, Peter T. C.
Gilbert, Richard
Kwon, Hyuk-Sang
Huang, Hayden

January 2010

3-D tissue cytometry has been successfully developed to optimize biological specimen throughput allo...

Imaging Mass Cytometry Images (APP1) from: A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially resolved tissue phenotyping at single-cell resolution.

Bortolomeazzi, Michele
Montorsi, Lucia
Temelkovski, Damjan
Keddar, Mohamed Reda
Acha-Sagredo, Amelia
Pitcher, Michael J
Basso, Gianluca
Laghi, Luigi
Rodriguez-Justo, Manuel
Spencer, Jo
Ciccarelli, Francesca D

October 2021

Four µm-thick sections were cut from the APP1 FFPE block with a microtome and used for staining with...

High throughput three-dimensional tissue cytometry

Kwon, Hyuk-Sang, 1971-

January 2007

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Mechanical Engineering, 2007.Includ...

Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues

Abstract

Extracted data

Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues

Abstract

Extracted data

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