Publication Data from Koch et al 2017

Contains the dataset and the MATLAB toolbox used for Koch et al. (2017) "Atlas registration for edema corrected MRI lesion volume in mouse stroke models" data_koch_et_al_jcbfm_2017.zip T2 weighted MRI data in NIFTI format from stroke mice 24 h post surgery. Contains raw data (images before registration, manually delineated hemisphere and lesion masks) and processed data (automatically generated brain mask and an additional version of raw images in registration to the Allen mouse brain atlas). Also contains a copy of some datasets for which slices in the image stack were removed. Includes an excel file describing the group assignment of each mouse (middle cerebral artery occlusion, photothrombosis or sham, full number of slices or partial number of slices) and describing files for each mouse. toolbox_koch_et_al_jcbfm_2017.zip Contains the MATLAB toolbox for registration of T2 weighted mouse MR images to the Allen brain atlas including a short manual. Important note to reviewers.pdf Please read this if you intend to download and test the toolbox before publication of the manuscriptWork was supported by the Federal Ministry of Education and Research (BMBF) (grant number 01EO0801, Center for Stroke Research Berlin) and Deutsche Forschungsgemeinschaft (DFG) (Excellence Cluster NeuroCure, Excellence Cluster BrainLinks-BrainTools)