The spots is an R package designed for statistical analysis of spatial omics data (10x Visium, SPOTS, etc.). It performs various statistical analyses and tests, including spatial component analysis (SCA) and global and local spatial statistics, such as univariate and bivariate Moran's I, Getis-Ord Gi* statistics, etc. CRAN repo: https://cran.r-project.org/web/packages/spots Github repo: https://github.com/stevexniu/spots Reference and Tutorials: https://stevexniu.github.io/spots See also Integrated protein and transcriptome high-throughput spatial profiling (2022
Breast cancer is a heterogenous disease with variability in tumor cells and in the surrounding tumor...
BackgroundSpatial transcriptomics (STs) simultaneously obtains the location and amount of gene expre...
Recent decades have witnessed the dawn of an era of molecular biology as a data science. Technologic...
SPOT is an interactive visualization tool for multi-dimensional data. It allows quick analysis of co...
Spatial transcriptomics spot data for breast cancer tissue used in the SpatialCPie articl
You can find here the datasets used in the publication: "Charting the Heterogeneity of Colorectal ...
This upload provides raw in situ sequencing (ISS) data used to validate Spatial Isoform Transcriptom...
This is a companion R Shiny application to the manuscript entitled "Assessment of Spatial Genomics f...
BackgroundSpatial transcriptomics (STs) simultaneously obtains the location and amount of gene expre...
Summary: SpatialExperiment is a new data infrastructure for storing and accessing spatially resolved...
As spatially resolved multiplex profiling of RNA and proteins becomes more prominent, it is increasi...
The SpaCET software is an R package for estimating cell lineages and intercellular interactions in t...
International audienceQuantitative mass-spectrometry-based spatial proteomics involves elaborate, ex...
Spatial proteomics is the systematic study of protein sub-cellular localisation. In this workflow, w...
Processed count matrices, brightfield HE-images (plain and annotated), spot selection files and meta...
Breast cancer is a heterogenous disease with variability in tumor cells and in the surrounding tumor...
BackgroundSpatial transcriptomics (STs) simultaneously obtains the location and amount of gene expre...
Recent decades have witnessed the dawn of an era of molecular biology as a data science. Technologic...
SPOT is an interactive visualization tool for multi-dimensional data. It allows quick analysis of co...
Spatial transcriptomics spot data for breast cancer tissue used in the SpatialCPie articl
You can find here the datasets used in the publication: "Charting the Heterogeneity of Colorectal ...
This upload provides raw in situ sequencing (ISS) data used to validate Spatial Isoform Transcriptom...
This is a companion R Shiny application to the manuscript entitled "Assessment of Spatial Genomics f...
BackgroundSpatial transcriptomics (STs) simultaneously obtains the location and amount of gene expre...
Summary: SpatialExperiment is a new data infrastructure for storing and accessing spatially resolved...
As spatially resolved multiplex profiling of RNA and proteins becomes more prominent, it is increasi...
The SpaCET software is an R package for estimating cell lineages and intercellular interactions in t...
International audienceQuantitative mass-spectrometry-based spatial proteomics involves elaborate, ex...
Spatial proteomics is the systematic study of protein sub-cellular localisation. In this workflow, w...
Processed count matrices, brightfield HE-images (plain and annotated), spot selection files and meta...
Breast cancer is a heterogenous disease with variability in tumor cells and in the surrounding tumor...
BackgroundSpatial transcriptomics (STs) simultaneously obtains the location and amount of gene expre...
Recent decades have witnessed the dawn of an era of molecular biology as a data science. Technologic...