Functional traits of tree species in old-growth and selectively logged forest

Description: Traits matrix for tree species in selectively logged forest at SAFE and in old-growth forest in Danum Valley and Maliau Basin. Sampled during the BALI project traits campaignProject: This dataset was collected as part of the following SAFE research project: Biodiversity and land-use impacts on tropical ecosystem function (BALI): Quantifying functional trait distributions across the disturbance gradientFunding: These data were collected as part of research funded by: NERC (Standard grant, NE/K016253/1)This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.Permits: These data were collected under permit from the following authorities:Sabah Biodiversity Centre (Research licence JKM/MBS.1000-2.2(385))XML metadata: GEMINI compliant metadata for this dataset is available hereFiles: This dataset consists of 3 files: Both_tree_functional_traits.xlsx, CSP_protocol_Chlorophyll_and_Carotenoids.pdf, CSP_protocol_Phenols_Tannins_Analysis.pdfBoth_tree_functional_traits.xlsxThis file contains dataset metadata and 1 data tables:Tree_functional_traits (described in worksheet Tree_functional_traits)Description: Traits matrix for tree species at SAFE and in Danum Valley, Maliau Basin sampled during the BALI project traits campaignNumber of fields: 84Number of data rows: 717Fields: location: Location (Field type: Categorical)forest_type: Forest type: OG: old-growth plots, Maliau and Danum; SL: selectively logged plots at SAFE (Field type: Categorical)forestplots_name: Plot name coherent with forestplots database (Field type: ID)plot_name_trait_campaign: Plot name used during the BALI trait campaign (Field type: ID)sample_code: Sample code referencing: plot-'T'(ree) ID-branch type (Field type: ID)branch_type: Binary classification of branch sampled depending on their position in the tree crown. BS: sun branch; BSH: shade branch (Field type: ID)sampling_date: Date of sampling (Field type: Date)tree_id: Reference for tree tag label (Field type: ID)species: Tree species (Field type: Taxa)height.m: Height of tree individual (Field type: Numeric trait)total_K_mg.g: Foliar potassium content in mg per g dry weight (Field type: Numeric trait)total_Ca_mg.g: Foliar calcium content in mg per g dry weight (Field type: Numeric trait)total_Mg_mg.g: Foliar magnesium content in mg per g dry weight (Field type: Numeric trait)total_P_mg.g: Foliar phosporus content in mg per g dry weight (Field type: Numeric trait)N_perc: Foliar nitrogen concentration (Field type: Numeric trait)15N_per_mil: Foliar 15N isotope concentration (Field type: Numeric trait)C_perc: Foliar carbon concentration (Field type: Numeric trait)13C_per_mil: Foliar 13C isotope concentration, expressed relative to Vienna Pee Dee Belemnite (VPDB) as δ13C in units of per mil [‰] (Field type: Numeric trait)CN: Foliar carbon nitrogen ratio (Field type: Numeric trait)DR_mean: Mean dark respiration measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch (Field type: Numeric trait)DR_sd: Standard deviation of dark respiration measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch (Field type: Numeric)DR_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)Asat_cons_mean: Mean light-saturated net photosynthesis measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch. Data cleaning very conservative: subset of values only with conductance higher 0.04, Ci between 150 - 300, and PS higher than 1, leading to fewer data points. (Field type: Numeric trait)Asat_cons_sd: Standard deviation of light-saturated net photosynthesis measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch (Field type: Numeric)Asat_cons_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)Amax_cons_mean: Mean maximum photosynthetic capacity measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch. Data cleaning very conservative: subset of values only with conductance higher 0.04, Ci between 150 - 300, and PS higher than 1, leading to fewer data points. (Field type: Numeric trait)Amax_cons_sd: Standard deviation of maximum photosynthetic capacity measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch (Field type: Numeric)Amax_cons_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)Asat_mean: Mean light-saturated net photosynthesis measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch (Field type: Numeric trait)Asat_sd: Standard deviation of light-saturated net photosynthesis measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch (Field type: Numeric)Asat_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)Amax_mean: Mean maximum photosynthetic capacity measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch (Field type: Numeric trait)Amax_sd: Standard deviation of maximum photosynthetic capacity measured on leaf of a branch that is cut under water and remains in water, calculated from replicated leaves per branch (Field type: Numeric)Amax_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)LA_cm2_mean: Mean leaf area (LA) calculated from fresh leaves collected from branches, scanned immediately. (Field type: Numeric trait)LA_cm2_sd: Standard deviation of leaf area (Field type: Numeric)LA_cm2_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)leaf_thickness_mm_mean: Mean thickness of leaf (Field type: Numeric trait)fresh_weight_g_mean: Mean leaf fresh weight (Field type: Numeric trait)dry_weight_g_mean: Mean leaf oven-dried weight (Field type: Numeric trait)dry_weight_mg_mean: Mean leaf oven-dried weight (Field type: Numeric trait)LDMC_mg.g_mean: Leaf dry-matter content (LDMC) is the oven-dry mass (mg) of a leaf, divided by its water-saturated fresh mass (g) mg g–1 (Field type: Numeric trait)leaf_thickness_mm_sd: Standard deviation of leaf thickness (Field type: Numeric)fresh_weight_g_sd: Standard deviation of fresh leaf weight (Field type: Numeric)dry_weight_g_sd: Standard deviation of dry leaf weight (Field type: Numeric)dry_weight_mg_sd: Standard deviation of dry leaf weight (Field type: Numeric)LDMC_mg.g_sd: Standard deviation of leaf dry matter content (Field type: Numeric)leaf_thickness_mm_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)fresh_weight_g_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)dry_weight_g_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)dry_weight_mg_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)LDMC_mg.g_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Replicate)branch_height_m: Height from where branch sample was taken (Field type: Numeric trait)chla_mg.g: Foliar chlorophyll a content (Field type: Numeric trait)chlb_mg.g: Foliar chlorophyll b content (Field type: Numeric trait)carot_mg.g: Foliar carotenoids content (Field type: Numeric trait)Fp_N_mm_mean: Mean force to punch leaf, dividing the observed force (N) required to puncture the leaf lamina by the circumference of the instrument's rod (Field type: Numeric trait)Fp_N_mm_sd: Standard deviation for force to punch (Field type: Numeric trait)Fp_N_mm_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Numeric trait)specific_Fp_mean: Mean specific force to punch (Fp divided by lamina thickness) (Field type: Numeric trait)specific_Fp_sd: Standard deviation for force to punch (Field type: Numeric trait)specific_Fp_n: Number of replicates, i.e. leaves per branch used for mean trait (Field type: Numeric trait)WD_B: Branch wood density from branch segment with bark (Field type: Numeric trait)WD_NB: Branch wood density from branch segment without bark (bark removed prior measurement) (Field type: Numeric trait)hemicellulose_perc: Foliar hemicellulose concentration (Field type: Numeric trait)cellulose_perc: Foliar cellulose concentration (Field type: Numeric trait)lignin_recalcitrants_perc: Foliar lignin and recalcitrants concentration (Field type: Numeric trait)Total_tannin_mg.g: Total foliar tannin concentration (Field type: Numeric trait)Total_phenol_mg.g: Total foliar phenol concentration (Field type: Numeric trait)SLA_mm2.mg_mean: Specific leaf area (SLA) determined as the one-sided area of a fresh leaf, divided by its oven-dry mass. (Field type: Numeric trait)total_K_mg.mm2: Foliar potassium content expressed on leaf area basis (Field type: Numeric trait)total_Ca_mg.mm2: Foliar calcium content expressed on leaf area basis (Field type: Numeric trait)total_Mg_mg.mm2: Foliar magnesium content expressed on leaf area basis (Field type: Numeric trait)total_P_mg.mm2: Foliar phosporus content expressed on leaf area basis (Field type: Numeric trait)chla_mg.mm2: Foliar chlorophyll a content expressed on leaf area basis (Field type: Numeric trait)chlb_mg.mm2: Foliar chlorophyll b content expressed on leaf area basis (Field type: Numeric trait)carot_mg.mm2: Foliar carotenoids content expressed on leaf area basis (Field type: Numeric trait)tannin_mg.mm2: Foliar tannin content expressed on leaf area basis (Field type: Numeric trait)phenol_mg_mm2: Foliar phenol content expressed on leaf area basis (Field type: Numeric trait)N_mg.mm2: Foliar nitrogen content expressed on leaf area basis (Field type: Numeric trait)C_mg.mm2: Foliar carbon content expressed on leaf area basis (Field type: Numeric trait)hemicellulose_mg.mm2: Foliar hemicellulose content expressed on leaf area basis (Field type: Numeric trait)cellulose_mg.mm2: Foliar cellulose content expressed on leaf area basis (Field type: Numeric trait)lignin_recalcitrants_mg.mm2: Foliar lignin and recalcitrants content expressed on leaf area basis (Field type: Numeric trait)CSP_protocol_Chlorophyll_and_Carotenoids.pdfDescription: Methodology of chlorophyll and carotenoids analysis, Carnegie Spectranomics protocol: https://drive.google.com/file/d/0B58dyv8L3FpMdGw0QWtiZElHQzQ/viewCSP_protocol_Phenols_Tannins_Analysis.pdfDescription: Methodology of phenols and tannins analysis, Carnegie Spectranomics protocol: https://drive.google.com/file/d/0B58dyv8L3FpMcTBHblQwRHdyRE0/viewDate range: 2014-05-01 to 2018-09-01Latitudinal extent: 4.5000 to 5.0700Longitudinal extent: 116.7500 to 117.8200Taxonomic coverage: All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets.Plantae - Tracheophyta - - Liliopsida - - - Poales - - - - Poaceae - - - - - Dinochloa - - - - - - Dinochloa trichogona - - - - - Imperata - - - - - - Imperata cylindrica - - - - - Paspalum - - - - - - Paspalum virgatum - - - Zingiberales - - - - Marantaceae - - - - - Phrynium - - - - - - Phrynium pubinerve - - - - Zingiberaceae - - - - - Etlingera - - Magnoliopsida - - - Asterales - - - - Asteraceae - - - - - Mikania - - - - - - Mikania micrantha - - - Celastrales - - - - Celastraceae - - - - - Lophopetalum - - - - - - Lophopetalum beccarianum - - - - - - Lophopetalum glabrum - - - - - - Lophopetalum javanicum - - - Cornales - - - - Cornaceae - - - - - Alangium - - - - - - Alangium javanicum - - - - Nyssaceae - - - - - Mastixia - - - - - - Mastixia trichotoma - - - Ericales - - - - Ebenaceae - - - - - Diospyros - - - - - - Diospyros andamanica - - - - - - Diospyros curranii - - - - - - Diospyros daemona - - - - - - Diospyros dictyoneura - - - - - - Diospyros macrophylla - - - - - - Diospyros muricata - - - - - - Diospyros pilosanthera - - - - - - Diospyros toposia - - - - - - Diospyros tuberculata - - - - Lecythidaceae - - - - - Barringtonia - - - - - - Barringtonia lanceolata - - - - - - Barringtonia macrostachya - - - - - - Barringtonia sarcostachys - - - - - Planchonia - - - - - - Planchonia brevistipitata - - - - Pentaphylacaceae - - - - - Adinandra - - - - - - Adinandra dumosa - - - - Primulaceae - - - - - Ardisia - - - - - - Ardisia macrophylla - - - - - Maesa - - - - - - Maesa macrothyrsa - - - - Sapotaceae - - - - - Madhuca - - - - - - Madhuca dubardii - - - - - - Madhuca korthalsii - - - - - Palaquium - - - - - - Palaquium dasyphyllum - - - - - - Palaquium obovatum - - - - - - Palaquium sericeum - - - - - Payena - - - - - - Payena acuminata - - - - Symplocaceae - - - - - Symplocos - - - - - - Symplocos fasciculata - - - - Theaceae - - - - - Pyrenaria - - - - - - Pyrenaria tawauensis - - - Fabales - - - - Fabaceae - - - - - Archidendron - - - - - - Archidendron clypearia - - - - - Crudia - - - - - - Crudia reticulata - - - - - - Crudia tenuipes - - - - - Cynometra - - - - - - Cynometra mirabilis - - - - - Dialium - - - - - - Dialium indum - - - - - - Dialium kunstleri - - - - - Fordia - - - - - - Fordia brachybotrys - - - - - - Fordia splendidissima - - - - - Sindora - - - - - Spatholobus - - - - - - Spatholobus macropterus - - - - Polygalaceae - - - - - Xanthophyllum - - - - - - Xanthophyllum flavescens - - - Fagales - - - - Fagaceae - - - - - Castanopsis - - - - - - Castanopsis hypophoenicea - - - - - Lithocarpus - - - - - - Lithocarpus blumeanus - - - - - - Lithocarpus conocarpus - - - - - - Lithocarpus echinifer - - - - - - Lithocarpus gracilis - - - - - - Lithocarpus leptogyne - - - - - - Lithocarpus sundaicus - - - - - Quercus - - - - - - Quercus argentata - - - - - - Quercus lowii - - - - - - Quercus merrillii - - - - - Trigonobalanus - - - - - - Trigonobalanus verticillata - - - Gentianales - - - - Apocynaceae - - - - - Alstonia - - - - - - Alstonia angustiloba - - - - Rubiaceae - - - - - Ludekia - - - - - - Ludekia borneensis - - - - - Nauclea - - - - - - Nauclea officinalis - - - - - - Nauclea subdita - - - - - Neolamarckia - - - - - - Neolamarckia cadamba - - - - - Neonauclea - - - - - - Neonauclea gigantea - - - - - Psydrax - - - - - - Psydrax dicoccos - - - - - Uncaria - - - - - - Uncaria cordata - - - - - Urophyllum - - - - - - Urophyllum polyneurum - - - Lamiales - - - - Lamiaceae - - - - - Callicarpa - - - - - - Callicarpa pentandra - - - - Oleaceae - - - - - Chionanthus - - - - - - Chionanthus macrocarpus - - - - - - Chionanthus pluriflorus - - - Laurales - - - - Lauraceae - - - - - Actinodaphne - - - - - Beilschmiedia - - - - - - Beilschmiedia micrantha - - - - - Caryodaphnopsis - - - - - - Caryodaphnopsis tonkinensis - - - - - Cryptocarya - - - - - - Cryptocarya nigra - - - - - - Cryptocarya nitens - - - - - Dehaasia - - - - - - Dehaasia caesia - - - - - - Dehaasia incrassata - - - - - Eusideroxylon - - - - - - Eusideroxylon zwageri - - - - - Lindera - - - - - - Lindera lucida - - - - - Litsea - - - - - - Litsea accedens - - - - - - Litsea angulata - - - - - - Litsea caulocarpa - - - - - - Litsea cordata - - - - - - Litsea garciae - - - - - - Litsea grandis - - - - - - Litsea rubiginosa - - - - - Nothaphoebe - - - - - - Nothaphoebe umbelliflora - - - - - Phoebe - - - - - - Phoebe grandis - - - Magnoliales - - - - Annonaceae - - - - - Cyathocalyx - - - - - Maasia - - - - - - Maasia sumatrana - - - - - Miliusa - - - - - - Miliusa macropoda - - - - - Monoon - - - - - Neo-uvaria - - - - - - Neo-uvaria acuminatissima - - - - - Orophea - - - - - - Orophea myriantha - - - - - Phaeanthus - - - - - - Phaeanthus splendens - - - - - Polyalthia - - - - - - Polyalthia obliqua - - - - - Pseuduvaria - - - - - - Pseuduvaria borneensis - - - - - Sageraea - - - - - - Sageraea elliptica - - - - - Stelechocarpus - - - - - - Stelechocarpus cauliflorus - - - - - Xylopia - - - - - - Xylopia ferruginea - - - - - - Xylopia stenopetala - - - - Magnoliaceae - - - - - Magnolia - - - - - - Magnolia borneensis - - - - - - Magnolia liliifera - - - - - - Magnolia tsiampacca - - - - Myristicaceae - - - - - Horsfieldia - - - - - - Horsfieldia crassifolia - - - - - Knema - - - - - - Knema glauca - - - - - - Knema latifolia - - - - - - Knema laurina - - - - - - Knema oblongata - - - - - Myristica - - - - - - Myristica smythiesii - - - Malpighiales - - - - Achariaceae - - - - - Hydnocarpus - - - - - - Hydnocarpus woodii - - - - - Ryparosa - - - - - - Ryparosa acuminata - - - - Calophyllaceae - - - - - Calophyllum - - - - - - Calophyllum soulattri - - - - - - Calophyllum woodii - - - - - Mesua - - - - - - Mesua borneensis - - - - - - Mesua macrantha - - - - - - Mesua oblongifolia - - - - Centroplacaceae - - - - - Bhesa - - - - - - Bhesa indica - - - - Chrysobalanaceae - - - - - Atuna - - - - - - Atuna racemosa - - - - - Licania - - - - - - Licania splendens - - - - Clusiaceae - - - - - Garcinia - - - - - - Garcinia benthamiana - - - - - - Garcinia forbesii - - - - - - Garcinia nervosa - - - - - - Garcinia parvifolia - - - - Euphorbiaceae - - - - - Blumeodendron - - - - - - Blumeodendron kurzii - - - - - - Blumeodendron tokbrai - - - - - Hancea - - - - - - Hancea penangensis - - - - - Macaranga - - - - - - Macaranga conifera - - - - - - Macaranga gigantea - - - - - - Macaranga hypoleuca - - - - - - Macaranga pearsonii - - - - - - Macaranga winkleri - - - - - Mallotus - - - - - - Mallotus leucodermis - - - - - - Mallotus miquelianus - - - - - - Mallotus mollissimus - - - - - - Mallotus wrayi - - - - - Neoscortechinia - - - - - - Neoscortechinia kingii - - - - - - Neoscortechinia philippinensis - - - - - Ptychopyxis - - - - - - Ptychopyxis arborea - - - - - Spathiostemon - - - - Hypericaceae - - - - - Cratoxylum - - - - Irvingiaceae - - - - - Irvingia - - - - - - Irvingia malayana - - - - Phyllanthaceae - - - - - Antidesma - - - - - Aporosa - - - - - - Aporosa confusa - - - - - - Aporosa falcifera - - - - - Baccaurea - - - - - - Baccaurea lanceolata - - - - - - Baccaurea macrocarpa - - - - - - Baccaurea pubera - - - - - - Baccaurea tetrandra - - - - - Cleistanthus - - - - - - Cleistanthus hirsutulus - - - - - - Cleistanthus hylandii - - - - - - Cleistanthus oblongifolius - - - - - - Cleistanthus paxii - - - - - - Cleistanthus pubens - - - - - Glochidion - - - - - - Glochidion borneensis - - - - - Phyllanthus - - - - - - Phyllanthus lutescens - - - - - - Phyllanthus ruber - - - - Putranjivaceae - - - - - Drypetes - - - - - - Drypetes longifolia - - - - Salicaceae - - - - - Flacourtia - - - - - - Flacourtia rukam - - - - - Homalium - - - - - - Homalium foetidum - - - Malvales - - - - Dipterocarpaceae - - - - - Dipterocarpus - - - - - - Dipterocarpus caudiferus - - - - - Dryobalanops - - - - - - Dryobalanops lanceolata - - - - - Hopea - - - - - - Hopea plagata - - - - - - Hopea sangal - - - - - Parashorea - - - - - - Parashorea malaanonan - - - - - - Parashorea smythiesii - - - - - - Parashorea warburgii - - - - - Shorea - - - - - - Shorea almon - - - - - - Shorea angustifolia - - - - - - Shorea argentifolia - - - - - - Shorea beccariana - - - - - - Shorea faguetiana - - - - - - Shorea falciferoides - - - - - - Shorea fallax - - - - - - Shorea gibbosa - - - - - - Shorea guiso - - - - - - Shorea johorensis - - - - - - Shorea laevis - - - - - - Shorea leprosula - - - - - - Shorea leptoderma - - - - - - Shorea macrophylla - - - - - - Shorea macroptera - - - - - - Shorea ovalis - - - - - - Shorea ovata - - - - - - Shorea parvifolia - - - - - - Shorea parvistipulata - - - - - - Shorea pauciflora - - - - - - Shorea pinanga - - - - - - Shorea superba - - - - - - Shorea symingtonii - - - - - - Shorea xanthophylla - - - - - Vatica - - - - - - Vatica dulitensis - - - - - - Vatica odorata - - - - Malvaceae - - - - - Boschia - - - - - - Boschia grandiflora - -