sv-callers workflow

sv-callers is a Snakemake-based workflow that combines several state-of-the-art tools for detecting structural variants (SVs) in whole genome sequencing data. This workflow is easy to use and to deploy on any Linux-based machine. In particular, the workflow supports automated software deployment, easy configuration and addition of new analysis tools as well as enables to scale from a single computer to different HPC clusters with minimal effort. The workflow includes the following SV callers Manta (1.1.0) DELLY (0.7.7) LUMPY (0.2.13) GRIDSS (1.3.4) and post-processing tools BCFtools (1.9) Viola-SV (1.0.2) SURVIVOR (1.0.6