Studying the ecology of photosynthetic microeukaryotes and prokaryotic cyanobacterial communities requires molecular tools to complement morphological observations. These tools rely on specific genetic markers and require the development of specialised databases to achieve taxonomic assignment. We set up a reference database, called µgreen-db, for the 23S rRNA gene. The sequences were retrieved from generalist (NCBI, SILVA) or Comparative RNA Web (CRW) databases, in addition to a more original approach involving recursive BLAST searches to obtain the best possible sequence recovery. At present, µgreen-db includes 2,326 23S rRNA sequences belonging to both eukaryotes and prokaryotes encompassing 442 unique genera and 736 species of photosynt...
Recent advances in next-generation sequencing (NGS) technologies spur progress in determining the mi...
Recent advances in next-generation sequencing (NGS) technologies spur progress in determining the mi...
The PHYTOPK28-D1D2 database comprises accession numbers, taxonomic classification and 28S rDNA (D1-D...
Studying the ecology of photosynthetic microeukaryotes and prokaryotic cyanobacterial communities re...
International audienceStudying the ecology of photosynthetic microeukaryotes and prokaryotic cyanoba...
Photosynthetic eukaryotes have a critical role as the main producers in most ecosystems of the biosp...
Photosynthetic eukaryotes have a critical role as the main producers in most ecosystems of the biosp...
International audienceThe interrogation of genetic markers in environmental meta-barcoding studies i...
International audienceThe taxonomic identification of organisms based on the amplification of specif...
<div><p>Recent advances in next-generation sequencing (NGS) technologies spur progress in determinin...
Recent advances in next-generation sequencing (NGS) technologies spur progress in determining the mi...
Recent advances in next-generation sequencing (NGS) technologies spur progress in determining the mi...
The PHYTOPK28-D1D2 database comprises accession numbers, taxonomic classification and 28S rDNA (D1-D...
Studying the ecology of photosynthetic microeukaryotes and prokaryotic cyanobacterial communities re...
International audienceStudying the ecology of photosynthetic microeukaryotes and prokaryotic cyanoba...
Photosynthetic eukaryotes have a critical role as the main producers in most ecosystems of the biosp...
Photosynthetic eukaryotes have a critical role as the main producers in most ecosystems of the biosp...
International audienceThe interrogation of genetic markers in environmental meta-barcoding studies i...
International audienceThe taxonomic identification of organisms based on the amplification of specif...
<div><p>Recent advances in next-generation sequencing (NGS) technologies spur progress in determinin...
Recent advances in next-generation sequencing (NGS) technologies spur progress in determining the mi...
Recent advances in next-generation sequencing (NGS) technologies spur progress in determining the mi...
The PHYTOPK28-D1D2 database comprises accession numbers, taxonomic classification and 28S rDNA (D1-D...