Spatial transcriptome data from coronal mouse brain sections after striatal injection of heme and heme-hemopexin

Database from Preclinical Examination of Early-Onset Thalamic–Cortical Seizures after Hemispheric Stroke

Pablo García-Peña
Milagros Ramos
Juan M. López
Ricardo Martinez-Murillo
Guillermo de Arcas
Daniel Gonzalez-Nieto

November 2022

The data files below show intracranial electroencephalography (iEEG) recordings from left hemisphere...

Automated identification of the mouse brain’s spatial compartments from in situ sequencing data

Partel, Gabriele
Hilscher, Markus M.
Milli, Giorgia
Solorzano, Leslie
Klemm, Anna H
Nilsson, Mats
Wählby, Carolina

January 2020

Background Neuroanatomical compartments of the mouse brain are identified and outlined mainly based ...

Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue.

Camilla Engblom
Kim Thrane
Qirong Lin
Alma Andersson
Hosein Toosi
Xinsong Chen
Embla Steiner
Giulia Mantovani
Michael Hagemann-Jensen
Sami Saarenpää
Mattias Jangard
Jakob Michaëlsson
Johan Hartman
Jens Lagergren
Jeff Mold
Joakim Lundeberg
Jonas Frisén

November 2022

This dataset contains a single zipped folder containing: data scripts needed to reprod...

Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain - Datasets and Python notebooks

Buzzi, Raphael M.
Akeret ,Kevin
Hugelshofer, Michael
Schaer, Dominik J

August 2021

This dataset and the associated Python notebooks and R-code are related to the publication "Spatial ...

Spatial transcriptome data from coronal mouse brain sections after striatal injection of heme and heme-hemopexin

Akeret, Kevin
Hugelshofer, Michael
Schaer, Dominik J
Buzzi, Raphael M

April 2022

Hemorrhagic stroke is a major cause of morbidity and mortality worldwide. Secondary mechanisms of br...

Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain

Buzzi, Raphael M.
Akeret, Kevin
Schwendinger, Nina
Klohs, Jan
Vallelian, Florence
Hugelshofer, Michael
Schaer, Dominik J.

February 2022

After intracranial hemorrhage, heme is released from cell-free hemoglobin. This red blood cell compo...

Exploratory investigation of intestinal function and bacterial translocation after focal cerebral ischemia in the mouse

Katarzyna Winek (764273)

October 2018

This is the dataset used in publication "Exploratory investigation of intestinal function and bacter...

Spatial transcriptomics reveals genes associated with dysregulated mitochondrial functions and stress signaling in Alzheimer's disease

Fernandez Navarro, J

This is the public data repository for the the work presented in Navarro and Croteau et al. iScience...

wahlby-lab/graph-iss: Automated identification of the mouse brain's spatial compartments from in situ sequencing data

Gabriele Partel
Markus M. Hilscher
Giorgia Milli
Leslie Solorzano
Anna H. Klemm
Mats Nilsson
Carolina Wählby

July 2020

Publication code for Partel, G. et al. "Automated identification of the mouse brain's spatial compar...

Data underlying the publication: Elucidating the Influence of Tumor Presence on the Polymersome Circulation Time in Mice

Denkova, A. G. (Antonia)

The data contains excel files and jpeg files obtained for in vivo experiments published in Elucidati...

Quantitative gene expression profiling of mouse brain regions reveals differential transcripts conserved in human and affected in disease models.

Brochier, Camille
Gaillard, Marie-Claude
Diguet, Elsa
Caudy, Nicolas
Dossat, Carole
Ségurens, Béatrice
Wincker, Patrick
Roze, Emmanuel
Caboche, Jocelyne
Hantraye, Philippe
Brouillet, Emmanuel
Elalouf, Jean-Marc
De Chaldée, Michel

April 2008

Using serial analysis of gene expression, we collected quantitative transcriptome data in 11 regions...

Erythropoietin restrains the inhibitory potential of interneurons in the mouse hippocampus: electrophysiology data

Curto, Yasmina
Carceller, Hector
Teruel-Martí, Vicent
Nacher, Juan
Ehrenreich, Hannelore

September 2023

This publication contains the recording data of the electrophysiology section of the manuscript enti...

Additional file 1 of Neuroinflammatory transcriptional programs induced in rhesus pre-frontal cortex white matter during acute SHIV infection

Chase E. Hawes (13922250)
Sonny R. Elizaldi (9684796)
Danielle Beckman (3696877)
Giovanne B. Diniz (6663395)
Yashavanth Shaan Lakshmanappa (13922253)
Sean Ott (13922256)
Blythe P. Durbin-Johnson (9576344)
Ashok R. Dinasarapu (9427665)
Andrea Gompers (10721824)
John H. Morrison (9688341)
Smita S. Iyer (8702931)

October 2022

Additional file 1: Fig. S1. Ranked genes by median normalized read counts in units of Log2 counts pe...

mouse_connectome_voxelwise

Coletta, L

Data used for the project entitled "Network structure of the mouse brain connectome with voxel resol...

Data from: Mapping of Dynamic Transcriptome Changes Associated with Silica-Triggered Autoimmune Pathogenesis in the Lupus-Prone NZBWF1 Mouse

Pestka, James
Benninghoff, Abby D.

May 2019

The dataset contains six files of tabular data with an accompanying README file. Supplementary file ...

Database from Preclinical Examination of Early-Onset Thalamic–Cortical Seizures after Hemispheric Stroke

Pablo García-Peña
Milagros Ramos
Juan M. López
Ricardo Martinez-Murillo
Guillermo de Arcas
Daniel Gonzalez-Nieto

November 2022

The data files below show intracranial electroencephalography (iEEG) recordings from left hemisphere...

Automated identification of the mouse brain’s spatial compartments from in situ sequencing data

Partel, Gabriele
Hilscher, Markus M.
Milli, Giorgia
Solorzano, Leslie
Klemm, Anna H
Nilsson, Mats
Wählby, Carolina

January 2020

Background Neuroanatomical compartments of the mouse brain are identified and outlined mainly based ...

Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue.

Camilla Engblom
Kim Thrane
Qirong Lin
Alma Andersson
Hosein Toosi
Xinsong Chen
Embla Steiner
Giulia Mantovani
Michael Hagemann-Jensen
Sami Saarenpää
Mattias Jangard
Jakob Michaëlsson
Johan Hartman
Jens Lagergren
Jeff Mold
Joakim Lundeberg
Jonas Frisén

November 2022

This dataset contains a single zipped folder containing: data scripts needed to reprod...

Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain - Datasets and Python notebooks

Buzzi, Raphael M.
Akeret ,Kevin
Hugelshofer, Michael
Schaer, Dominik J

August 2021

This dataset and the associated Python notebooks and R-code are related to the publication "Spatial ...

Spatial transcriptome data from coronal mouse brain sections after striatal injection of heme and heme-hemopexin

Akeret, Kevin
Hugelshofer, Michael
Schaer, Dominik J
Buzzi, Raphael M

April 2022

Hemorrhagic stroke is a major cause of morbidity and mortality worldwide. Secondary mechanisms of br...

Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain

Buzzi, Raphael M.
Akeret, Kevin
Schwendinger, Nina
Klohs, Jan
Vallelian, Florence
Hugelshofer, Michael
Schaer, Dominik J.

February 2022

After intracranial hemorrhage, heme is released from cell-free hemoglobin. This red blood cell compo...

Exploratory investigation of intestinal function and bacterial translocation after focal cerebral ischemia in the mouse

Katarzyna Winek (764273)

October 2018

This is the dataset used in publication "Exploratory investigation of intestinal function and bacter...

Spatial transcriptomics reveals genes associated with dysregulated mitochondrial functions and stress signaling in Alzheimer's disease

Fernandez Navarro, J

This is the public data repository for the the work presented in Navarro and Croteau et al. iScience...

wahlby-lab/graph-iss: Automated identification of the mouse brain's spatial compartments from in situ sequencing data

Gabriele Partel
Markus M. Hilscher
Giorgia Milli
Leslie Solorzano
Anna H. Klemm
Mats Nilsson
Carolina Wählby

July 2020

Publication code for Partel, G. et al. "Automated identification of the mouse brain's spatial compar...

Data underlying the publication: Elucidating the Influence of Tumor Presence on the Polymersome Circulation Time in Mice

Denkova, A. G. (Antonia)

The data contains excel files and jpeg files obtained for in vivo experiments published in Elucidati...

Quantitative gene expression profiling of mouse brain regions reveals differential transcripts conserved in human and affected in disease models.

Brochier, Camille
Gaillard, Marie-Claude
Diguet, Elsa
Caudy, Nicolas
Dossat, Carole
Ségurens, Béatrice
Wincker, Patrick
Roze, Emmanuel
Caboche, Jocelyne
Hantraye, Philippe
Brouillet, Emmanuel
Elalouf, Jean-Marc
De Chaldée, Michel

April 2008

Using serial analysis of gene expression, we collected quantitative transcriptome data in 11 regions...

Erythropoietin restrains the inhibitory potential of interneurons in the mouse hippocampus: electrophysiology data

Curto, Yasmina
Carceller, Hector
Teruel-Martí, Vicent
Nacher, Juan
Ehrenreich, Hannelore

September 2023

This publication contains the recording data of the electrophysiology section of the manuscript enti...

Additional file 1 of Neuroinflammatory transcriptional programs induced in rhesus pre-frontal cortex white matter during acute SHIV infection

Chase E. Hawes (13922250)
Sonny R. Elizaldi (9684796)
Danielle Beckman (3696877)
Giovanne B. Diniz (6663395)
Yashavanth Shaan Lakshmanappa (13922253)
Sean Ott (13922256)
Blythe P. Durbin-Johnson (9576344)
Ashok R. Dinasarapu (9427665)
Andrea Gompers (10721824)
John H. Morrison (9688341)
Smita S. Iyer (8702931)

October 2022

Additional file 1: Fig. S1. Ranked genes by median normalized read counts in units of Log2 counts pe...

mouse_connectome_voxelwise

Coletta, L

Data used for the project entitled "Network structure of the mouse brain connectome with voxel resol...

Data from: Mapping of Dynamic Transcriptome Changes Associated with Silica-Triggered Autoimmune Pathogenesis in the Lupus-Prone NZBWF1 Mouse

Pestka, James
Benninghoff, Abby D.

May 2019

The dataset contains six files of tabular data with an accompanying README file. Supplementary file ...

Database from Preclinical Examination of Early-Onset Thalamic–Cortical Seizures after Hemispheric Stroke

Pablo García-Peña
Milagros Ramos
Juan M. López
Ricardo Martinez-Murillo
Guillermo de Arcas
Daniel Gonzalez-Nieto

November 2022

The data files below show intracranial electroencephalography (iEEG) recordings from left hemisphere...

Automated identification of the mouse brain’s spatial compartments from in situ sequencing data

Partel, Gabriele
Hilscher, Markus M.
Milli, Giorgia
Solorzano, Leslie
Klemm, Anna H
Nilsson, Mats
Wählby, Carolina

January 2020

Background Neuroanatomical compartments of the mouse brain are identified and outlined mainly based ...

Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue.

Camilla Engblom
Kim Thrane
Qirong Lin
Alma Andersson
Hosein Toosi
Xinsong Chen
Embla Steiner
Giulia Mantovani
Michael Hagemann-Jensen
Sami Saarenpää
Mattias Jangard
Jakob Michaëlsson
Johan Hartman
Jens Lagergren
Jeff Mold
Joakim Lundeberg
Jonas Frisén

November 2022

This dataset contains a single zipped folder containing: data scripts needed to reprod...

Spatial transcriptome data from coronal mouse brain sections after striatal injection of heme and heme-hemopexin

Abstract

Extracted data

Spatial transcriptome data from coronal mouse brain sections after striatal injection of heme and heme-hemopexin

Abstract

Extracted data

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