clEsperanto/pyclesperanto_prototype: 0.19.0

New functions draw_mesh_between_labels_with_touch_portion_in_range draw_mesh_between_n_most_touching_labels generate_n_most_touching_neighbors_matrix generate_touch_mean_intensity_matrix generate_touch_mean_intensity_within_range_matrix generate_touch_portion_within_range_neighbor_matrix is_matrix_symmetric maximum_of_n_most_touching_neighbors_map maximum_of_touch_portion_within_range_neighbors_map mean_of_n_most_touching_neighbors_map mean_of_touch_portion_within_range_neighbors_map merge_labels_with_border_intensity_within_range minimum_of_n_most_touching_neighbors_map minimum_of_touch_portion_within_range_neighbors_map mode_of_n_most_touching_neighbors_map mode_of_touch_portion_within_range_neighbors_map smooth_labels standard_deviation_of_n_most_touching_neighbors_map standard_deviation_of_touch_portion_within_range_neighbors_map symmetric_maximum_matrix symmetric_mean_matrix symmetric_minimum_matrix symmetric_sum_matrix touch_portion_within_range_neighbor_count touch_portion_within_range_neighbor_count_map New parameters count_touching_neighbors has a new optional parameter ignore_background New measurements statistics_of_labelled_neighbors has new columns: touch_portion_above_?_neighbor_count with ? in [0, 0.16, 0.2, 0.33, 0.5, 0.75] Bug fixes erode_labels with radius>1 eroded one pixel too much. opening_labels with radius>1 left a 1 pixel gap between labels unintentionally Miscellaneous Added hints to documentation in case functions need images with isotropic voxels as input. Deprecated methods touch_matrix_to_adjacency_matrix is deprecated, use symmetric_maximum_matrix or symmetric_minimum_matrix, symmetric_mean_matrix or symmetric_sum_matrix instead. Backwards compatibility breaking changes generate_touch_matrix now produces a symmetric matrix as "touching" is bi-directional. In case label A touches label B, also label B touches A. If you want to have a matrix like in pyclesperanto_prototype < 0.19.0, you need to call cle.set_where_x_greater_than_y(matrix, 0) on the matrix after generating it. touch_matrix_to_mesh and all draw_*_mesh functions will now process asymmetric matrices when drawing meshes. The mesh line intensity will be the maximum of the potentially two different values stored in any touch/distance/...-matrix. If you prefer the old way of how matrices were handled, you need to call this before drawing the mesh: cle.set_where_x_greater_than_y(matrix, 0). This will ensure that only the lower half of the matrix will be taken into account for drawing the mesh, which is pretty much the old behaviour in pyclesperanto_prototype < 0.19.0 . count_touching_neighbors ignores touching background. If you want to have the old behaviour back, set ignore_background=False when calling the function