PoreSpy

:rocket: New features Added function to compute diffusive size factor using dns #new Added zip_to_stack for converting 2D tiff files in a zip folder into a 3D tiff image #new Added folder_to_stack for converting 2D tiff files in a folder into a 3D tiff image #new Added random_spheres as a wrapper to rsa for more descriptive name (rsa to be deprecated eventually) #new Added show_panels function to visualizations module #new Added spheres_from_coords to generators #new Added find_bbox to tools #new Add better sierpinski foam generator that accepts shape #new :cake: Enhancements Added mode='drainage/imbibition' argument to all seq/size/satn functions, to accomodate upcoming imbibition simulations #enh Make Results object more useful by including name of function that produced it, and time #enh Added seed argument to all random generators #enh Enhanced spheres_from_coords to work with negative coordinates #enh #bug Improved the speed of find_bbox #enh Added protrusion argument to rsa #enh :wrench: Maintenace adding release.yml to package to assist with automatic changelog generation #maint Fixed imageio deprecation warnings in 2 examples #doc, #maint using __all__ everywhere for imports #maint Removed optional dependencies from setup.py #maint :warning: API changes Changed radius to r in voronoi_edges #api Moved ibip percolation functions to simulations module :bug: Bugfixes Included dtype in np.sum calls throughout to ensure it returns the correct value on large images #bug Fixed bug in find_trapped_regions when no solid present on outlet face #bug Fix parse bug in _parse_pad_width used by snow2 if boundary_width was a list of lists #bug Fix divs bug in blobs #bug Improved output of Results object when large dicts present #bug Enhanced spheres_from_coords to work with negative coordinates #enh #bug Fixed some bugs pertaining to numpy deprecations becoming reality #bug Fixed bugs in rsa when using clearance #bug Fixed dynamically changing loglevel #bug tortuosity_fd should raise Exception if all pores are floating pores #bug :green_book: Documentation Fixed formatting of the Results table in tortuosity notebook #doc Fixed imageio deprecation warnings in 2 examples #doc, #maint Added tutorial notebook explaining the use of spheres_from_coords on various csv files #doc Fix link to installation guide in readme #docs Added examples on snow2, regions_to_network, and other network extraction related function #docs Added examples on often asked questions in the Discussions #doc Installation The txt files below contain the specific packages and their versions to install to get a functioning installation for archival purposes using conda. Instructions for installing are in the top of the file.If you use this software, please cite it as below