METEORE provides snakemake pipelines for various tools to detect DNA methylation from Nanopore sequencing reads, enabling a systematic application of our benchmarking analyses to different datasets. METEORE also provides new predictive models (random forest and multiple linear regression) that combine the outputs from the tools to produce a consensus prediction with higher accuracy than the individual tools
DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing dataset
File list nanome.tar.gz: source code of paper, also available at GitHub https://github.com/liuyan...
Abstract High-throughput third-generation nanopore sequencing devices have enormous potential for si...
DNA methylation plays a fundamental role in the control of gene expression and genome integrity. Alt...
DNA methylation plays a fundamental role in the control of gene expression and genome integrity. Alt...
Datasets that contain a minimum of nanopore reads sufficient for hidden Markov model training and fo...
Abstract Background Nanopore long-read sequencing technology greatly expands the capacity of long-ra...
A key benefit of long-read nanopore sequencing technology is the ability to detect modified DNA base...
BACKGROUND: Nanopore long-read sequencing technology greatly expands the capacity of long-range, sin...
A key benefit of long-read nanopore sequencing technology is the ability to detect modified DNA base...
For each identified methylation pattern, raw Nanopore signals (red lines) for three related sequence...
DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing dataset
DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing dataset
File list nanome.tar.gz: source code of paper, also available at GitHub https://github.com/liuyan...
Abstract High-throughput third-generation nanopore sequencing devices have enormous potential for si...
DNA methylation plays a fundamental role in the control of gene expression and genome integrity. Alt...
DNA methylation plays a fundamental role in the control of gene expression and genome integrity. Alt...
Datasets that contain a minimum of nanopore reads sufficient for hidden Markov model training and fo...
Abstract Background Nanopore long-read sequencing technology greatly expands the capacity of long-ra...
A key benefit of long-read nanopore sequencing technology is the ability to detect modified DNA base...
BACKGROUND: Nanopore long-read sequencing technology greatly expands the capacity of long-range, sin...
A key benefit of long-read nanopore sequencing technology is the ability to detect modified DNA base...
For each identified methylation pattern, raw Nanopore signals (red lines) for three related sequence...
DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing dataset
DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing dataset
File list nanome.tar.gz: source code of paper, also available at GitHub https://github.com/liuyan...
Abstract High-throughput third-generation nanopore sequencing devices have enormous potential for si...