This is a bug-fix and performance release of sourmash. There are no major new features. Minor new features: add query info to gather CSV output (#1565) Bug fixes and performance improvements: Improved MinHash.remove_many(...) performance by five orders of magnitude (#1571) Fix SBT index saving bug that arbitrarily replaced names (but not content) of identical signatures in .sbt.zip files (#1568) Empty zipfiles should not cause AssertionError (https://github.com/dib-lab/sourmash/pull/1546) Major refactoring and new internal functionality: update MinHash.set_abundances to remove hash if 0 abund; handle negative abundances (#1575) Refactoring and cleanup: Fix tests that fail to close files that they open (#1550) Add "&" and " | " as alt...
This release contains many new features! Of particular note: sourmash now estimates and outputs ave...
Features: Implement improved & consistent argument parsing (#785) Moving loading and save sigs to r...
GTDB R202-RS207 release - in gtdb-rs207.genomic/ and gtdb-rs207.genomic-reps/. This was built using ...
This is a pre-release version of sourmash v4.0.0. Draft release notes are below; comments appreciate...
sourmash v4.5.0 provides several minor bug fixes, as well as a number of new features. This release ...
Major new features: Document sourmash.fig usage and behavior; enable output of compare clustering w...
This release adds several significant features: first, we've added a set of taxonomy command-line fu...
Incompatibilities with previous versions due to bugs: sourmash gather on SBT databases was setting ...
Minor new features: Save prefetch csv directly from prefetch-gather with --save-prefetch-csv (#1765...
This is the first of several minor releases (v3.5.x) from the new stable branch. These releases focu...
Feature deprecations add deprecation warning for sourmash compute --input-is-10x (#1326) add warnin...
This release contains many new features! Of particular note: sourmash now estimates and outputs ave...
Features: Implement improved & consistent argument parsing (#785) Moving loading and save sigs to r...
GTDB R202-RS207 release - in gtdb-rs207.genomic/ and gtdb-rs207.genomic-reps/. This was built using ...
This is a pre-release version of sourmash v4.0.0. Draft release notes are below; comments appreciate...
sourmash v4.5.0 provides several minor bug fixes, as well as a number of new features. This release ...
Major new features: Document sourmash.fig usage and behavior; enable output of compare clustering w...
This release adds several significant features: first, we've added a set of taxonomy command-line fu...
Incompatibilities with previous versions due to bugs: sourmash gather on SBT databases was setting ...
Minor new features: Save prefetch csv directly from prefetch-gather with --save-prefetch-csv (#1765...
This is the first of several minor releases (v3.5.x) from the new stable branch. These releases focu...
Feature deprecations add deprecation warning for sourmash compute --input-is-10x (#1326) add warnin...
This release contains many new features! Of particular note: sourmash now estimates and outputs ave...
Features: Implement improved & consistent argument parsing (#785) Moving loading and save sigs to r...
GTDB R202-RS207 release - in gtdb-rs207.genomic/ and gtdb-rs207.genomic-reps/. This was built using ...