SeqKit v0.12.0 seqkit: fix checking input file existence. new global flag --infile-list for long list of input files, if given, they are appended to files from cli arguments. seqkit seq: do not force switching on -g when using -m/-M. seqkit translate: supporting multiple frames. #96 seqkit grep/locate: add detection and warning for space existing in search pattern/sequence. speed improvement (2X) for -m/--max-mismatch. shenwei356/bwt/issues/3 seqkit locate: new flag -M/--hide-matched for hiding matched sequences. #98 new flag -r/--use-regexp for explicitly using regular expression, so improve speed of default index operation. And you have to switch this on if using regexp now. #101 new flag -F/--use-fmi for improving search speed for l...
Changes SeqKit v0.10.1 seqkit fx2tab: new option -q/--avg-qual for outputting average read quality...
Changelog seqkit: better handle of empty file, no error message shown. #36 new subcommand seqkit sp...
Changes SeqKit v2.3.1 - 2022-09-22 seqkit grep/locate: fix bug of FMIndex building for empty seque...
Changes SeqKit v0.12.0 seqkit: fix checking input file existence. new global flag --infile-list fo...
Changes SeqKit v2.4.0 - 2023-03-17 seqkit: support bzip2 format. #361 support setting compression l...
Changelog SeqKit v0.9.2 seqkit: stricter checking for value of global flag -t/--seq-type. seqkit s...
Changes SeqKit v0.14.0 new command seqkit pair: match up paired-end reads from two fastq files, fa...
Changelog SeqKit v0.10.2 seqkit: fix bug of parsing sequence ID delimited by tab (\t). #78 seqkit ...
SeqKit v0.14.0 new command seqkit pair: match up paired-end reads from two fastq files, faster than...
Changes SeqKit v0.16.0 new command seqkit head-genome: print sequences of the first genome with co...
Changes SeqKit v0.9.3 seqkit stats: fix panic for empty file. #57 seqkit translate: add flag -x/--...
Changes SeqKit v0.11.0 seqkit: fix hanging when reading from truncated gzip file. new commands: se...
Changes SeqKit v2.2.0 - 2022-03-14 seqkit: add support of zx and zstd input/output formats. #274 f...
Changelog SeqKit v2.1.0 - 2021-11-15 seqkit seq: fix filtering by average quality -Q/-R. #257 se...
seqkit sliding: add flag -g/--greedy, exporting last subsequences even shorter than windows size. #8...
Changes SeqKit v0.10.1 seqkit fx2tab: new option -q/--avg-qual for outputting average read quality...
Changelog seqkit: better handle of empty file, no error message shown. #36 new subcommand seqkit sp...
Changes SeqKit v2.3.1 - 2022-09-22 seqkit grep/locate: fix bug of FMIndex building for empty seque...
Changes SeqKit v0.12.0 seqkit: fix checking input file existence. new global flag --infile-list fo...
Changes SeqKit v2.4.0 - 2023-03-17 seqkit: support bzip2 format. #361 support setting compression l...
Changelog SeqKit v0.9.2 seqkit: stricter checking for value of global flag -t/--seq-type. seqkit s...
Changes SeqKit v0.14.0 new command seqkit pair: match up paired-end reads from two fastq files, fa...
Changelog SeqKit v0.10.2 seqkit: fix bug of parsing sequence ID delimited by tab (\t). #78 seqkit ...
SeqKit v0.14.0 new command seqkit pair: match up paired-end reads from two fastq files, faster than...
Changes SeqKit v0.16.0 new command seqkit head-genome: print sequences of the first genome with co...
Changes SeqKit v0.9.3 seqkit stats: fix panic for empty file. #57 seqkit translate: add flag -x/--...
Changes SeqKit v0.11.0 seqkit: fix hanging when reading from truncated gzip file. new commands: se...
Changes SeqKit v2.2.0 - 2022-03-14 seqkit: add support of zx and zstd input/output formats. #274 f...
Changelog SeqKit v2.1.0 - 2021-11-15 seqkit seq: fix filtering by average quality -Q/-R. #257 se...
seqkit sliding: add flag -g/--greedy, exporting last subsequences even shorter than windows size. #8...
Changes SeqKit v0.10.1 seqkit fx2tab: new option -q/--avg-qual for outputting average read quality...
Changelog seqkit: better handle of empty file, no error message shown. #36 new subcommand seqkit sp...
Changes SeqKit v2.3.1 - 2022-09-22 seqkit grep/locate: fix bug of FMIndex building for empty seque...