Publication date
February 2023
DOIAbstract
Support comparison of trees with different tips. Fix caching errors in MapDist() (#98). Update tests for compatibility with ape 5.
Support comparison of trees with different tips. Fix caching errors in MapDist() (#98). Update tests for compatibility with ape 5.
<p>For trees comprising and nodes, respectively, there are pairs of nodes to evaluate. (A) Starti...
MSTEdges() supports distance matrices with > 256 entries. Package 'vdiffr' used conditionally
New features New function LengthAdded() tests which characters contribute to taxon instability, per...
New vignette on how to compare tree sets. PathVector() now treats trees with a root node as rooted....
Update tests for compatibility with 'TreeTools' v1.1.0 Improve memory and pointer handling
Fix bug when comparing a "multiPhylo" object containing a single tree. Documentation clarification:...
Support star trees in RootTree(). Improve memory handling in root_on_node(). Documentation linkage
GUI allows selection of subset of trees, for easier analysis of Bayesian tree sets Miscellaneous fix...
Comparison of accuracy and feature dimension under different methods based on tree.</p
Add NTip.phyDat() method. Update MakeTreeBinary() docs and tests to reflect updated behaviour of ap...
Catch hang-inducing bugs in RootOnNode(). Update doubleFactorials cache to fix as.integer() roundin...
New features CollapseNodes and CollapseEdges allow the creation of polytomies Tree2Splits lists the...
ReadTntTree() supports multi-line trees. as.MixedBase() supports larger trees (44-32767 tips). Add...
New functions to measure cluster sizes (see ?"cluster-statistics"). KMeansPP() conducts clustering ...
New functions ConstrainedNJ() returns an approximation to a neighbour-joining tree that respects co...
<p>For trees comprising and nodes, respectively, there are pairs of nodes to evaluate. (A) Starti...
MSTEdges() supports distance matrices with > 256 entries. Package 'vdiffr' used conditionally
New features New function LengthAdded() tests which characters contribute to taxon instability, per...
New vignette on how to compare tree sets. PathVector() now treats trees with a root node as rooted....
Update tests for compatibility with 'TreeTools' v1.1.0 Improve memory and pointer handling
Fix bug when comparing a "multiPhylo" object containing a single tree. Documentation clarification:...
Support star trees in RootTree(). Improve memory handling in root_on_node(). Documentation linkage
GUI allows selection of subset of trees, for easier analysis of Bayesian tree sets Miscellaneous fix...
Comparison of accuracy and feature dimension under different methods based on tree.</p
Add NTip.phyDat() method. Update MakeTreeBinary() docs and tests to reflect updated behaviour of ap...
Catch hang-inducing bugs in RootOnNode(). Update doubleFactorials cache to fix as.integer() roundin...
New features CollapseNodes and CollapseEdges allow the creation of polytomies Tree2Splits lists the...
ReadTntTree() supports multi-line trees. as.MixedBase() supports larger trees (44-32767 tips). Add...
New functions to measure cluster sizes (see ?"cluster-statistics"). KMeansPP() conducts clustering ...
New functions ConstrainedNJ() returns an approximation to a neighbour-joining tree that respects co...
<p>For trees comprising and nodes, respectively, there are pairs of nodes to evaluate. (A) Starti...
MSTEdges() supports distance matrices with > 256 entries. Package 'vdiffr' used conditionally
New features New function LengthAdded() tests which characters contribute to taxon instability, per...
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