Publication date
July 2023
DOIAbstract
updating bit-dl-ncbi-assemblies to enable downloading nucleotide cds files (*_cds_from_genomic.fna.gz, based on input format argument of "nt_cds
updating bit-dl-ncbi-assemblies to enable downloading nucleotide cds files (*_cds_from_genomic.fna.gz, based on input format argument of "nt_cds
Fixing bit-dl-ncbi-accessions new problem if a target file type doesn't exist. Previously, the downl...
added bit-filter-KOFamScan-results program added bit-GL-combine-KO-and-tax-table
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> </ul...
updating bit-dl-ncbi-assemblies to enable downloading nucleotide cds files (*_cds_from_genomic.fna.g...
robustness improvement to bit-dl-ncbi-assemblies when wanted file type doesn't exist in ncb
changing from ftp to https for downloading ncbi assembly summary tables in bit-dl-ncbi-assemblies, a...
changing from ftp to https for downloading ncbi assembly summary tables in bit-dl-ncbi-assemblies, a...
<p>updating bit-dl-ncbi-assemblies to be able to pull feature tab, stats, and reports too</...
Some script to download bacterial and fungal genomes from NCBI after they restructured their FTP a w...
<p>updating bit-dl-ncbi-assemblies to be able to pull feature tab, stats, and reports too</...
genbank and refseq assembly summary tables are now cached instead of downloaded every run (https://g...
adding script to pull genome-assembly summarization workflow, bit-get-genome-summarize-w
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
This FASTA file is the NCBI Nt (Nucleotide) database (public domain) used for holistic metagenomic s...
added taxonkit added entrez-direct added bit-update-ncbi-taxonomy script to update the database taxo...
Fixing bit-dl-ncbi-accessions new problem if a target file type doesn't exist. Previously, the downl...
added bit-filter-KOFamScan-results program added bit-GL-combine-KO-and-tax-table
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> </ul...
updating bit-dl-ncbi-assemblies to enable downloading nucleotide cds files (*_cds_from_genomic.fna.g...
robustness improvement to bit-dl-ncbi-assemblies when wanted file type doesn't exist in ncb
changing from ftp to https for downloading ncbi assembly summary tables in bit-dl-ncbi-assemblies, a...
changing from ftp to https for downloading ncbi assembly summary tables in bit-dl-ncbi-assemblies, a...
<p>updating bit-dl-ncbi-assemblies to be able to pull feature tab, stats, and reports too</...
Some script to download bacterial and fungal genomes from NCBI after they restructured their FTP a w...
<p>updating bit-dl-ncbi-assemblies to be able to pull feature tab, stats, and reports too</...
genbank and refseq assembly summary tables are now cached instead of downloaded every run (https://g...
adding script to pull genome-assembly summarization workflow, bit-get-genome-summarize-w
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
This FASTA file is the NCBI Nt (Nucleotide) database (public domain) used for holistic metagenomic s...
added taxonkit added entrez-direct added bit-update-ncbi-taxonomy script to update the database taxo...
Fixing bit-dl-ncbi-accessions new problem if a target file type doesn't exist. Previously, the downl...
added bit-filter-KOFamScan-results program added bit-GL-combine-KO-and-tax-table
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> </ul...
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