fixed path creation in bed_or_bam2bw() fixed scalar initialization bug fixed bug in Bio::ViennaNGS::BamStat scripts/bam_to_bigwig.pl can now produce normalized bigWigs added functionality to compute RPKM in Bio::ViennaNGS::Expression added tests for UCSC.pm added tests for SpliceJunc.p
What's Changed fix: move SOURCE_CLASS to cli (main branch) by @korikuzma in https://github.com/canc...
This is the last release before we introduce a new command-line interface for mdbenchmark plot and s...
What's Changed Update linting on predictions by @cthoyt in https://github.com/biopragmatics/biomapp...
requires Perl >= 5.10.0 minimum version of Bio::DB::Sam is 1.37 integrated Bio::ViennaNGS::Bam integ...
added Bio::ViennaNGS::FeatureIO added Bio::ViennaNGS::Subtypes refactored Bio::ViennaNGS::Fasta to...
added Bio::ViennaNGS::FeatureInterval added Bio::ViennaNGS::BedGraphLine added Bio::ViennaNGS::Peak ...
added Bio::ViennaNGS::FeatureIO added Bio::ViennaNGS::Subtypes refactored Bio::ViennaNGS::Fasta to...
requires Perl >= 5.12.0 added sortbed() added uniquify_bam() added scripts/bam_uniq.pl added scripts...
This is a bugfix release: fixed an issue in Bio::ViennaNGS::FeatureChain updated PO
updated mkdircheck() updated rmdircheck() fixed directory creation in bam_split.pl updated POD in...
Minor bugfix release of Bacting 0.0.35 fixing an Log4j dependency and now uses a released Bacting-Bi...
added dump()method to Bio::ViennaNGS::FeatureInterval, Bio::ViennaNGS::MinimalFeature and Bio::Vienn...
Replace the bam-to-gvcf and jointgenotyping pipelines with a gatk-variantcalling pipeline. This red...
Lot of things in this release. See the documentation especially for htslib support (tested with htsl...
Fixed bug where input file paths that didn't exist were ignored Added --seed parameter for pipeline ...
What's Changed fix: move SOURCE_CLASS to cli (main branch) by @korikuzma in https://github.com/canc...
This is the last release before we introduce a new command-line interface for mdbenchmark plot and s...
What's Changed Update linting on predictions by @cthoyt in https://github.com/biopragmatics/biomapp...
requires Perl >= 5.10.0 minimum version of Bio::DB::Sam is 1.37 integrated Bio::ViennaNGS::Bam integ...
added Bio::ViennaNGS::FeatureIO added Bio::ViennaNGS::Subtypes refactored Bio::ViennaNGS::Fasta to...
added Bio::ViennaNGS::FeatureInterval added Bio::ViennaNGS::BedGraphLine added Bio::ViennaNGS::Peak ...
added Bio::ViennaNGS::FeatureIO added Bio::ViennaNGS::Subtypes refactored Bio::ViennaNGS::Fasta to...
requires Perl >= 5.12.0 added sortbed() added uniquify_bam() added scripts/bam_uniq.pl added scripts...
This is a bugfix release: fixed an issue in Bio::ViennaNGS::FeatureChain updated PO
updated mkdircheck() updated rmdircheck() fixed directory creation in bam_split.pl updated POD in...
Minor bugfix release of Bacting 0.0.35 fixing an Log4j dependency and now uses a released Bacting-Bi...
added dump()method to Bio::ViennaNGS::FeatureInterval, Bio::ViennaNGS::MinimalFeature and Bio::Vienn...
Replace the bam-to-gvcf and jointgenotyping pipelines with a gatk-variantcalling pipeline. This red...
Lot of things in this release. See the documentation especially for htslib support (tested with htsl...
Fixed bug where input file paths that didn't exist were ignored Added --seed parameter for pipeline ...
What's Changed fix: move SOURCE_CLASS to cli (main branch) by @korikuzma in https://github.com/canc...
This is the last release before we introduce a new command-line interface for mdbenchmark plot and s...
What's Changed Update linting on predictions by @cthoyt in https://github.com/biopragmatics/biomapp...
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