Bioinformatics software for effective analysis of mass spectrometry data: S2P, Mass-Up and LA-iMageS

Mass-Up and Decision Peptide-Driven: two open-source applications for MALDI-TOF MS data analysis and protein quantification

H. López-Fernández (3571415)
D. Glez-Peña (3571403)
M. Reboiro-Jato (3571412)
F. Fdez-Riverola (3571406)
J.L. Capelo-Martínez (5254381)
H.M. Santos (5283547)

May 2018

Poster presentation at EUBIC Winter School 2017 (10th - 13th January 2017, Sporthotel Se...

Bioinformatics in mass spectrometry data analysis for proteomics studies

S. Cristoni S
L. Rossi Bernardi

November 2004

Mass spectrometry is a technique widely employed for the identification and characterization of pro...

ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)

Albaum, Stefan
Neuweger, Heiko
Lange, Sita
Mertens, Dominik
Runte, Kai
Kalinowski, Jörn
Nattkemper, Tim Wilhelm
Goesmann, Alexander

January 2008

Albaum S, Neuweger H, Lange S, et al. ProSE - "Software as a Service" for Quantitative Proteomics (P...

Bioinformatics software for effective analysis of mass spectrometry data: S2P, Mass-Up and LA-iMageS

H. López-Fernández (3571415)
M. Reboiro-Jato (3571412)
G. de S. Pessôa (5375647)
M. A. Z. Arruda (5375650)
J.E. Araújo (5254378)
H.M. Santos (5283547)
F. Fdez-Riverola (3571406)
D. Glez-Peña (3571403)
J. L. Capelo-Martínez (5375644)

June 2018

Poster presentation at the V International Conference on Analytical Proteomics (ICAP 2017).</p

Biomarker discovery and bioimaging bioinformatics tools for mass spectrometry-based applications: Mass-Up and LA-iMageS

López-Fernández, Hugo
Reboiro-Jato, Miguel
de S. Pessôa, Gustavo
Z. Arruda, Marco A.
Santos, Hugo M.
Capelo-Martínez, José L.
Fdez-Riverola, Florentino
Glez-Peña, Daniel

December 2016

Poster presentation at II Caparica Christmas Conference on Sample Treatment (5-7 December, Costa de ...

Using S2P to process emPAI quantitation results obtained from MS/MS Mascot searches

H. López-Fernández
J.E. Araújo
H.M. Santos
A. Fernández-Lodeiro
C. Fernández-Lodeiro
J. Djafari
J. Coelho
G. Pinto
N. Morais
G. Marcelo
J. Machado
S. Jorge
J. Prates
E. Oliveira
J. Fernández-Lodeiro
C. Lodeiro-Espiño
J. L. Capelo-Martínez

July 2017

Poster presentation at the V International Conference on Analytical Proteomics (ICAP 2017)

Using S2P to process emPAI quantitation results obtained from MS/MS Mascot searches

H. López-Fernández (3571415)
J.E. Araújo (5254378)
H.M. Santos (5283547)
A. Fernández-Lodeiro (5375674)
C. Fernández-Lodeiro (5375680)
J. Djafari (5375653)
J. Coelho (5375668)
G. Pinto (5375683)
N. Morais (5375656)
G. Marcelo (5375671)
J. Machado (5375662)
S. Jorge (5375686)
J. Prates (5375677)
E. Oliveira (2007745)
J. Fernández-Lodeiro (5375659)
C. Lodeiro-Espiño (5375665)
J. L. Capelo-Martínez (5375644)

June 2018

Poster presentation at the V International Conference on Analytical Proteomics (ICAP 2017).</p

Mass-Up and Decision Peptide-Driven: two open-source applications for MALDI-TOF MS data analysis and protein quantification

H. López-Fernández
D. Glez-Peña
M. Reboiro-Jato
F. Fdez-Riverola
J.L. Capelo-Martínez
H.M. Santos

January 2017

Poster presentation at EUBIC Winter School 2017 (10th - 13th January 2017, Sporthotel Semmering, Aus...

Quantitative analysis of mass spectrometry proteomics data : Software for improved life science

Teleman, Johan

May 2016

The rapid advances in life science, including the sequencing of the human genome and numerous other ...

MSight: an image analysis software for liquid chromatography-mass spectrometry

Palagi Graf, Patricia
Walther, Daniel
Quadroni, Manfredo
Catherinet, Sébastien
Burgess, Jennifer
Zimmermann-Ivol, Catherine G
Sanchez, Jean-Charles
Binz, Pierre-Alain
Hochstrasser, Denis
Appel, Ron David

January 2005

Images obtained from high-throughput mass spectrometry (MS) contain information that remains hidden ...

MSight: an image analysis software for liquid chromatography-mass spectrometry.

Palagi, P.M.
Walther, D.
Quadroni, M.
Catherinet, S.
Burgess, J.
Zimmermann-Ivol, C.G.
Sanchez, J.C.
Binz, P.A.
Hochstrasser, D.F.
Appel, R.D.

January 2005

Images obtained from high-throughput mass spectrometry (MS) contain information that remains hidden ...

Mass-Up and Decision Peptide-Driven: two open-source applications for MALDI-TOF MS data analysis and protein quantification

H. López-Fernández
D. Glez-Peña
M. Reboiro-Jato
F. Fdez-Riverola
J.L. Capelo-Martínez
H.M. Santos

January 2017

Poster presentation at EUBIC Winter School 2017 (10th - 13th January 2017, Sporthotel Semmering, Aus...

An open-source software for fast and automatic processing of 2D-gel and MALDI-based mass spectrometry protein data

J.E. Araújo
H. López-Fernández
D. Glez-Peña
M. Reboiro-Jato
F. Fdez-Riverola
J.L. Capelo-Martínez

January 2017

Poster presentation at EUBIC Winter School 2017 (10th - 13th January 2017, Sporthotel Semmering, Aus...

A High-Throughput Bioinformatics Platform for Mass Spectrometry-Based Proteomics*

Thodoros Topaloglou
Moyez Dharsee
Rob M. Ewing
Yury Bukhman

February 2015

Abstract. The success of mass spectrometry-based proteomics in emerging applications such as biomark...

Bioinformatics support for high-throughput proteomics

Wilke, A.
Rückert, Christian
Bartels, D.
Dondrup, M
Goesmann, Alexander
Hüser, A. T.
Kespohl, S.
Linke, B.
Mahne, M.
McHardy, A.
Pühler, Alfred
Meyer, F.

January 2003

Wilke A, Rückert C, Bartels D, et al. Bioinformatics support for high-throughput proteomics. JOURNAL...

Mass-Up and Decision Peptide-Driven: two open-source applications for MALDI-TOF MS data analysis and protein quantification

H. López-Fernández (3571415)
D. Glez-Peña (3571403)
M. Reboiro-Jato (3571412)
F. Fdez-Riverola (3571406)
J.L. Capelo-Martínez (5254381)
H.M. Santos (5283547)

May 2018

Poster presentation at EUBIC Winter School 2017 (10th - 13th January 2017, Sporthotel Se...

Bioinformatics in mass spectrometry data analysis for proteomics studies

S. Cristoni S
L. Rossi Bernardi

November 2004

Mass spectrometry is a technique widely employed for the identification and characterization of pro...

ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)

Albaum, Stefan
Neuweger, Heiko
Lange, Sita
Mertens, Dominik
Runte, Kai
Kalinowski, Jörn
Nattkemper, Tim Wilhelm
Goesmann, Alexander

January 2008

Albaum S, Neuweger H, Lange S, et al. ProSE - "Software as a Service" for Quantitative Proteomics (P...

Bioinformatics software for effective analysis of mass spectrometry data: S2P, Mass-Up and LA-iMageS

H. López-Fernández (3571415)
M. Reboiro-Jato (3571412)
G. de S. Pessôa (5375647)
M. A. Z. Arruda (5375650)
J.E. Araújo (5254378)
H.M. Santos (5283547)
F. Fdez-Riverola (3571406)
D. Glez-Peña (3571403)
J. L. Capelo-Martínez (5375644)

June 2018

Poster presentation at the V International Conference on Analytical Proteomics (ICAP 2017).</p

Biomarker discovery and bioimaging bioinformatics tools for mass spectrometry-based applications: Mass-Up and LA-iMageS

López-Fernández, Hugo
Reboiro-Jato, Miguel
de S. Pessôa, Gustavo
Z. Arruda, Marco A.
Santos, Hugo M.
Capelo-Martínez, José L.
Fdez-Riverola, Florentino
Glez-Peña, Daniel

December 2016

Poster presentation at II Caparica Christmas Conference on Sample Treatment (5-7 December, Costa de ...

Using S2P to process emPAI quantitation results obtained from MS/MS Mascot searches

H. López-Fernández
J.E. Araújo
H.M. Santos
A. Fernández-Lodeiro
C. Fernández-Lodeiro
J. Djafari
J. Coelho
G. Pinto
N. Morais
G. Marcelo
J. Machado
S. Jorge
J. Prates
E. Oliveira
J. Fernández-Lodeiro
C. Lodeiro-Espiño
J. L. Capelo-Martínez

July 2017

Poster presentation at the V International Conference on Analytical Proteomics (ICAP 2017)

Using S2P to process emPAI quantitation results obtained from MS/MS Mascot searches

H. López-Fernández (3571415)
J.E. Araújo (5254378)
H.M. Santos (5283547)
A. Fernández-Lodeiro (5375674)
C. Fernández-Lodeiro (5375680)
J. Djafari (5375653)
J. Coelho (5375668)
G. Pinto (5375683)
N. Morais (5375656)
G. Marcelo (5375671)
J. Machado (5375662)
S. Jorge (5375686)
J. Prates (5375677)
E. Oliveira (2007745)
J. Fernández-Lodeiro (5375659)
C. Lodeiro-Espiño (5375665)
J. L. Capelo-Martínez (5375644)

June 2018

Poster presentation at the V International Conference on Analytical Proteomics (ICAP 2017).</p

Mass-Up and Decision Peptide-Driven: two open-source applications for MALDI-TOF MS data analysis and protein quantification

H. López-Fernández
D. Glez-Peña
M. Reboiro-Jato
F. Fdez-Riverola
J.L. Capelo-Martínez
H.M. Santos

January 2017

Poster presentation at EUBIC Winter School 2017 (10th - 13th January 2017, Sporthotel Semmering, Aus...

Quantitative analysis of mass spectrometry proteomics data : Software for improved life science

Teleman, Johan

May 2016

The rapid advances in life science, including the sequencing of the human genome and numerous other ...

MSight: an image analysis software for liquid chromatography-mass spectrometry

Palagi Graf, Patricia
Walther, Daniel
Quadroni, Manfredo
Catherinet, Sébastien
Burgess, Jennifer
Zimmermann-Ivol, Catherine G
Sanchez, Jean-Charles
Binz, Pierre-Alain
Hochstrasser, Denis
Appel, Ron David

January 2005

Images obtained from high-throughput mass spectrometry (MS) contain information that remains hidden ...

MSight: an image analysis software for liquid chromatography-mass spectrometry.

Palagi, P.M.
Walther, D.
Quadroni, M.
Catherinet, S.
Burgess, J.
Zimmermann-Ivol, C.G.
Sanchez, J.C.
Binz, P.A.
Hochstrasser, D.F.
Appel, R.D.

January 2005

Images obtained from high-throughput mass spectrometry (MS) contain information that remains hidden ...

Mass-Up and Decision Peptide-Driven: two open-source applications for MALDI-TOF MS data analysis and protein quantification

H. López-Fernández
D. Glez-Peña
M. Reboiro-Jato
F. Fdez-Riverola
J.L. Capelo-Martínez
H.M. Santos

January 2017

Poster presentation at EUBIC Winter School 2017 (10th - 13th January 2017, Sporthotel Semmering, Aus...

An open-source software for fast and automatic processing of 2D-gel and MALDI-based mass spectrometry protein data

J.E. Araújo
H. López-Fernández
D. Glez-Peña
M. Reboiro-Jato
F. Fdez-Riverola
J.L. Capelo-Martínez

January 2017

Poster presentation at EUBIC Winter School 2017 (10th - 13th January 2017, Sporthotel Semmering, Aus...

A High-Throughput Bioinformatics Platform for Mass Spectrometry-Based Proteomics*

Thodoros Topaloglou
Moyez Dharsee
Rob M. Ewing
Yury Bukhman

February 2015

Abstract. The success of mass spectrometry-based proteomics in emerging applications such as biomark...

Bioinformatics support for high-throughput proteomics

Wilke, A.
Rückert, Christian
Bartels, D.
Dondrup, M
Goesmann, Alexander
Hüser, A. T.
Kespohl, S.
Linke, B.
Mahne, M.
McHardy, A.
Pühler, Alfred
Meyer, F.

January 2003

Wilke A, Rückert C, Bartels D, et al. Bioinformatics support for high-throughput proteomics. JOURNAL...

Mass-Up and Decision Peptide-Driven: two open-source applications for MALDI-TOF MS data analysis and protein quantification

H. López-Fernández (3571415)
D. Glez-Peña (3571403)
M. Reboiro-Jato (3571412)
F. Fdez-Riverola (3571406)
J.L. Capelo-Martínez (5254381)
H.M. Santos (5283547)

May 2018

Poster presentation at EUBIC Winter School 2017 (10th - 13th January 2017, Sporthotel Se...

Bioinformatics in mass spectrometry data analysis for proteomics studies

S. Cristoni S
L. Rossi Bernardi

November 2004

Mass spectrometry is a technique widely employed for the identification and characterization of pro...

ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)

Albaum, Stefan
Neuweger, Heiko
Lange, Sita
Mertens, Dominik
Runte, Kai
Kalinowski, Jörn
Nattkemper, Tim Wilhelm
Goesmann, Alexander

January 2008

Albaum S, Neuweger H, Lange S, et al. ProSE - "Software as a Service" for Quantitative Proteomics (P...

Bioinformatics software for effective analysis of mass spectrometry data: S2P, Mass-Up and LA-iMageS

Abstract

Extracted data

Bioinformatics software for effective analysis of mass spectrometry data: S2P, Mass-Up and LA-iMageS

Abstract

Extracted data

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