The datasets contains metagenomic and metatranscriptomic Illumina reads simulated for 3 different sets of Bacteria: - Simple7 7 bacterial species, inlcuding 2 members of the genus Corynebacterium. - Medium20 20 bacterial species, including 2 members of the genus Corynebacterium. - Complex32 32 bacterial species, including 2 strains Escherichia coli, 3 members of the genus Shigella,2 members of the Salmonella, 4 members of the Lactobacillus, 2 members of the Corynebacterium, 2 members of the Desulfosporosinus
<p>Refer to <b>Table S1</b> (<b>A</b>)–(<b>J</b>) in <b><a href="http://www.plosone.org/article/info...
<p>This is a mock dataset of 120 000 artificial contigs of 1 kb length derived by simulating reads f...
Figure S1. Scatterplot contrasting for each sample the number of successfully profiled species again...
Metagenomics is a rapidly emerging field of research for studying microbial communities. To evaluate...
<p>Only the top 21 species of the 113 bacteria included in the dataset are shown. Genometa achieves ...
Metatranscriptome simulations of Microbiome samples. Simulations are designed to create challenging ...
List of microbial genomes used to construct the simulated metagenome used in an upcoming study. Simu...
Generating sequence data of a defined community composed of organisms with complete reference genome...
Generating sequence data of a defined community composed of organisms with complete reference genome...
A shotgun dataset was simulated with the 454sim v1.04 package (Lysholm et al., 2011) using default s...
Metagenomics is a rapidly emerging field of research for studying microbial communities. To evaluate...
<p>1) Taxonomic profiles from real metagenomes are used to construct mock microbial communities. 2) ...
Shotgun metagenomics (SM) sequencing is a popular method used in microbial ecology to obtain insight...
## Predicting pathogenic potentials from NGS reads: novel bacterial species This repository contain...
<p>All bacterial species present were detected. Reads were retrieved in the same stoichiometric prop...
<p>Refer to <b>Table S1</b> (<b>A</b>)–(<b>J</b>) in <b><a href="http://www.plosone.org/article/info...
<p>This is a mock dataset of 120 000 artificial contigs of 1 kb length derived by simulating reads f...
Figure S1. Scatterplot contrasting for each sample the number of successfully profiled species again...
Metagenomics is a rapidly emerging field of research for studying microbial communities. To evaluate...
<p>Only the top 21 species of the 113 bacteria included in the dataset are shown. Genometa achieves ...
Metatranscriptome simulations of Microbiome samples. Simulations are designed to create challenging ...
List of microbial genomes used to construct the simulated metagenome used in an upcoming study. Simu...
Generating sequence data of a defined community composed of organisms with complete reference genome...
Generating sequence data of a defined community composed of organisms with complete reference genome...
A shotgun dataset was simulated with the 454sim v1.04 package (Lysholm et al., 2011) using default s...
Metagenomics is a rapidly emerging field of research for studying microbial communities. To evaluate...
<p>1) Taxonomic profiles from real metagenomes are used to construct mock microbial communities. 2) ...
Shotgun metagenomics (SM) sequencing is a popular method used in microbial ecology to obtain insight...
## Predicting pathogenic potentials from NGS reads: novel bacterial species This repository contain...
<p>All bacterial species present were detected. Reads were retrieved in the same stoichiometric prop...
<p>Refer to <b>Table S1</b> (<b>A</b>)–(<b>J</b>) in <b><a href="http://www.plosone.org/article/info...
<p>This is a mock dataset of 120 000 artificial contigs of 1 kb length derived by simulating reads f...
Figure S1. Scatterplot contrasting for each sample the number of successfully profiled species again...