PapenfussLab/gridss: 2.13.0

Breaking changes: Removed B prefixed from ANRP ANSR ANRPQ ANSRQ fields. Fields are now consistent with the GRIDSS convention that B prefixed fields are breakend fields #520 #542 require samtools 1.13 or later Significant changes: #537 reverting back to using external aligner as the default soft clip realigner Reverted due to: in-process bwa causing JVM crashes on some systems. In-process bwa alignments not deterministic when using more than 1 thread Added --internalaligner flag. Useful if the slight performance boost during the preprocessing step is more important that determinism Minor changes: Added workaround for https://github.com/samtools/htsjdk/issues/1584 #520 @keiranmraine updated edirect install in Dockerfile #537 AnnotateInsertedSequence now respects --externalaligner command line argument Using fast compression for temporary files in the preprocess step Improved word wrapping in usage message #520 ensuring java.io.tmpdir exists before unpacking the JNI .so files #530 moved ulimit change to before set errexit so all ulimit failures will be silent Updated gridsstools to htslib 1.14 Updated gridsstools docker building to match 1.14 htslib requirement Bump gridsstools version due to htslib version update #538 using htslib/htslib_static.mk instead of hard-coding htslib system libraries Added (non-default) ReadWeighted scoring model optio