What's Changed fix: cis-and-trans stats by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/195 - Viewpoint region was excluded from number of cis interactions in tiled-c mode. Now corrected. Full Changelog: https://github.com/sims-lab/CapCruncher/compare/v0.3.2...v0.3.
What's Changed fix: move SOURCE_CLASS to cli (main branch) by @korikuzma in https://github.com/canc...
What's Changed fix: ensure positive dim of rectangular annulus by @lgrcia in https://github.com/lgr...
Full Changelog: https://github.com/hiddenSymmetries/simsopt/compare/v0.9.0...v0.9.
This release includes a number of bugfixes related to processing Tiled-C data, normalization and cis...
What's Changed feat(utilities): Added viewpoint-coordinates by @alsmith151 in https://github.com/si...
What's Changed fix: converted all viewpoint names to strings by @alsmith151 in https://github.com/s...
[0.2.3] - 2022-08-19 Bug Fixes Fixes Tiled-C filtering error due to typo in index specification for...
What's Changed feat: enable pileups with multiple viewpoint bins by @alsmith151 in https://github.c...
What's Changed Fix: downgrade snakemake version by @alsmith151 in https://github.com/sims-lab/CapCr...
What's Changed chore: updated CD.yml by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull...
This is a quick patch to allow bias subtraction and flatfielding that were disabled due to typos. Fu...
What's Changed BREAKING CHANGES: Cgat-core workflow management software replaced by snakemake. Capc...
DeCiFer now outputs "NaN" for confidence intervals (CIs) for clusters to which no mutations were ass...
What's Changed fix: return all locations in response (#126, #152) by @korikuzma in https://github.c...
What's Changed fix: correct misspelling resonse->response in output files by @riyavsinha in https:/...
What's Changed fix: move SOURCE_CLASS to cli (main branch) by @korikuzma in https://github.com/canc...
What's Changed fix: ensure positive dim of rectangular annulus by @lgrcia in https://github.com/lgr...
Full Changelog: https://github.com/hiddenSymmetries/simsopt/compare/v0.9.0...v0.9.
This release includes a number of bugfixes related to processing Tiled-C data, normalization and cis...
What's Changed feat(utilities): Added viewpoint-coordinates by @alsmith151 in https://github.com/si...
What's Changed fix: converted all viewpoint names to strings by @alsmith151 in https://github.com/s...
[0.2.3] - 2022-08-19 Bug Fixes Fixes Tiled-C filtering error due to typo in index specification for...
What's Changed feat: enable pileups with multiple viewpoint bins by @alsmith151 in https://github.c...
What's Changed Fix: downgrade snakemake version by @alsmith151 in https://github.com/sims-lab/CapCr...
What's Changed chore: updated CD.yml by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull...
This is a quick patch to allow bias subtraction and flatfielding that were disabled due to typos. Fu...
What's Changed BREAKING CHANGES: Cgat-core workflow management software replaced by snakemake. Capc...
DeCiFer now outputs "NaN" for confidence intervals (CIs) for clusters to which no mutations were ass...
What's Changed fix: return all locations in response (#126, #152) by @korikuzma in https://github.c...
What's Changed fix: correct misspelling resonse->response in output files by @riyavsinha in https:/...
What's Changed fix: move SOURCE_CLASS to cli (main branch) by @korikuzma in https://github.com/canc...
What's Changed fix: ensure positive dim of rectangular annulus by @lgrcia in https://github.com/lgr...
Full Changelog: https://github.com/hiddenSymmetries/simsopt/compare/v0.9.0...v0.9.
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