Publication date
August 2023
DOIAbstract
Improve performance of fastqread Add mypy type checking and various minor development environment changesIf you use this software, please cite it as below
Improve performance of fastqread Add mypy type checking and various minor development environment changesIf you use this software, please cite it as below
What's Changed feat(qmule): new classes for creating fastqs from BAMs and vice versa by @holmeso in...
Update includes readjusted nQuadSegs to improve speed of all of fmap's functions
RAPIDpy updated for initial CF-1.6 compliant version of RAPID. There are also simple tests added to ...
A quality control tool for FASTQ high throughput sequence data, inspired by FastQC
Publication release Major Performance benchmarking added to the documentation, including compari...
Major Substantial improvements to the documentation, including usage examples Added a function for ...
v0.4 has the following updates and changes function analyis.format.fq_qual_var() added for detectin...
Add support for ambiguous amino acid codes (Glx, Asx, Xaa) Updated benchmarks to reflect performanc...
Fix ENA fastq fetching (#163 ) Full Changelog: https://github.com/saketkc/pysradb/compare/v1.4.1......
add line buffering for DummyTqdmFile (#960) fix & update demo notebook (#1127) fix py3 urllib exampl...
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification
Summary: Many Next Generation Sequencing analyses involve the basic manipulation of input sequence d...
This repository contains the Plassembler benchmarking v0.1.4 input FASTQ files, methodology and outp...
This release introduces the RAPIDDataset which manages the different versions of the RAPID Qout file...
FasterAI: Prune and Distill your models with FastAI and PyTorchIf you use this software, please cite...
What's Changed feat(qmule): new classes for creating fastqs from BAMs and vice versa by @holmeso in...
Update includes readjusted nQuadSegs to improve speed of all of fmap's functions
RAPIDpy updated for initial CF-1.6 compliant version of RAPID. There are also simple tests added to ...
A quality control tool for FASTQ high throughput sequence data, inspired by FastQC
Publication release Major Performance benchmarking added to the documentation, including compari...
Major Substantial improvements to the documentation, including usage examples Added a function for ...
v0.4 has the following updates and changes function analyis.format.fq_qual_var() added for detectin...
Add support for ambiguous amino acid codes (Glx, Asx, Xaa) Updated benchmarks to reflect performanc...
Fix ENA fastq fetching (#163 ) Full Changelog: https://github.com/saketkc/pysradb/compare/v1.4.1......
add line buffering for DummyTqdmFile (#960) fix & update demo notebook (#1127) fix py3 urllib exampl...
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification
Summary: Many Next Generation Sequencing analyses involve the basic manipulation of input sequence d...
This repository contains the Plassembler benchmarking v0.1.4 input FASTQ files, methodology and outp...
This release introduces the RAPIDDataset which manages the different versions of the RAPID Qout file...
FasterAI: Prune and Distill your models with FastAI and PyTorchIf you use this software, please cite...
What's Changed feat(qmule): new classes for creating fastqs from BAMs and vice versa by @holmeso in...
Update includes readjusted nQuadSegs to improve speed of all of fmap's functions
RAPIDpy updated for initial CF-1.6 compliant version of RAPID. There are also simple tests added to ...
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