2.4.1 (2022-11-04) Bug Fixes channel order for bioconductor package download (f57044a) correct default value for representative_transcripts and check for existence of path (#59) (a85b268) fix channel order under strict priorities (bdbfb10) fix default minimum p-value in fgsea (#61) (a6a857d) for some rules, omit software env when caching (#63) (1d2e3a9
Extensive differential splicing analysis using IsoformSwitchAnalyzeR. Added ability to choose the st...
Switch to new deployment and usage info that conforms with the snakemake workflow catalogue setup
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
2.5.0 (2023-05-13) Features Support for 3-prime RNA sequencing (#62) (c06c573) Bug Fixes fix rep...
2.5.1 (2023-06-14) Bug Fixes Updated the get-transcript-info.R file and its dependencies (#73) (e44...
2.4.2 (2022-12-02) Bug Fixes fix gene-level p-value adjustment (use Benjamini-Hochberg instead of B...
2.4.0 (2022-03-29) Features adapt to fgsea updates, configure fgsea precision by minimum achievable...
Fix a bug in sleuth_init that had previously led to a crash if ensembl metadata did not contain info...
The reference transcriptome is now downloaded automatically from Ensembl, using new release and buil...
Extended caption on p-value histograms and empty data fix for fgsea (@dlaehnemann)
A bug leading to a crash with custom representative transcript handling has been fixed. Differential...
add protocol strandedness awareness make trimming optional adapt to latest best practices and struct...
snakePipes 2.3.0 Deprecated mode Gruen in scRNAseq. scRNAseq mode Alevin now outputs spliced/unspli...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
Extensive differential splicing analysis using IsoformSwitchAnalyzeR. Added ability to choose the st...
Switch to new deployment and usage info that conforms with the snakemake workflow catalogue setup
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
2.5.0 (2023-05-13) Features Support for 3-prime RNA sequencing (#62) (c06c573) Bug Fixes fix rep...
2.5.1 (2023-06-14) Bug Fixes Updated the get-transcript-info.R file and its dependencies (#73) (e44...
2.4.2 (2022-12-02) Bug Fixes fix gene-level p-value adjustment (use Benjamini-Hochberg instead of B...
2.4.0 (2022-03-29) Features adapt to fgsea updates, configure fgsea precision by minimum achievable...
Fix a bug in sleuth_init that had previously led to a crash if ensembl metadata did not contain info...
The reference transcriptome is now downloaded automatically from Ensembl, using new release and buil...
Extended caption on p-value histograms and empty data fix for fgsea (@dlaehnemann)
A bug leading to a crash with custom representative transcript handling has been fixed. Differential...
add protocol strandedness awareness make trimming optional adapt to latest best practices and struct...
snakePipes 2.3.0 Deprecated mode Gruen in scRNAseq. scRNAseq mode Alevin now outputs spliced/unspli...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
Extensive differential splicing analysis using IsoformSwitchAnalyzeR. Added ability to choose the st...
Switch to new deployment and usage info that conforms with the snakemake workflow catalogue setup
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...