Colour polymorphism associated with a gene duplication in male wood tiger moths

Colour polymorphism associated with a gene duplication in male wood tiger moths Scripts and data files for producing the figures in Brien, Orteu et al. 2023 Fig2A. QTL - linkage maps for white and yellow genomes, and R script. Fig2B. GWAS - R script and files. Fig2C. Gene track - R script and gene locations. Alignment file produced with R/pafr. Fig2D. Coverage - txt files of mean coverage across 1kb windows in white and yellow samples. Fig2_supp2and3 Depth per site for WGS data separated in white and yellow moths, and filtered with three different mapping qualities (20, 40 and 60). Figure 3 (and supplementary figures) RNAseq analyses of pupal wing disks of wood tiger moths tscripts/tmoth_RNAseq_mapped2WW.R: differential expression (DE) analysis using the limma package. input/seq_samples_RNAseq.csv: file containing information on the samples used for the study. input/featureCounts_mapped2WW: Read counts output from featureCounts and used as input for the DE analysis. results/mapww_significant_genes_allStages_001.csv: DE genes between colour morphs with p-value < 0.01 results/mapww_significant_genes_allStages_005.csv:DE genes between colour morphs with p-value < 0.05 Fig4_supp4 Spectral data for wildtype and CRISPR moths. Each individual is the average of 3 readings for that moth and data was smoothed in R/pavo with span 0.3. Fig5_supp1 Absorbance data for testing for pigments