Prevented temporary bedGraph files from being written to (possibly small) shared-memory drives even when TMPDIR is set to somewhere else. Now shared memory is only used if requested by setting TMPDIR (or other appropriate environment variables) to /dev/shm. Fixed a bug in bamPEFragmentSize that caused incompatibility with newer matplotlib releases. (issue #928
Version 0.3.0 Fixed bug due to changes in the OSX backend for matplotlib 2.0. Addressed deprecation...
Pinning dependencies to: hicmatrix version 9: API changes in version 10 krbalancing version 0.0.4: ...
Changed the package name from PileOMeth to MethylDackel. It is unfortunate that the temporary "PileO...
Fixed #91, wherein there was a memory leak if many files were written in a single python session. Fi...
Fixed a memory leak when numpy is used during file creation. Thanks to @pmarks for both finding and ...
matplotlib version pin has been removed, some colormap changes in cm.py for newer version. Some plot...
Fixed --plotNumbers not working in plotCorrelation. This was issue #838. Fixed compatibility with ma...
What's Changed new subcommand: Bigwig average #1169 dendogram of plotCorrelation now matches each c...
plotCoverage now has a --BED option, to restrict plots and output to apply to a specific set of regi...
Version 0.4.1 fixes a bug that occurred when multiple GLG tests were run in parallel with a shared f...
News for version 3.20.4 Fixed memory leaks in the libxml2-based DMR and DDX parsers. Moved more towa...
Add option to write a file as output for hicInfo Muting log output from matplotlib and cooler Update...
Fixed an issue with older versions of matplotlib where the default line width could crash the plot's...
v01-10 2019-01-31 Markus Frank (PR#480) Fix bug in geoDisplay to allow passing the volume display ...
Improving the documentation hicPlotMatrix: add three options: change font size, change rotation of X...
Version 0.3.0 Fixed bug due to changes in the OSX backend for matplotlib 2.0. Addressed deprecation...
Pinning dependencies to: hicmatrix version 9: API changes in version 10 krbalancing version 0.0.4: ...
Changed the package name from PileOMeth to MethylDackel. It is unfortunate that the temporary "PileO...
Fixed #91, wherein there was a memory leak if many files were written in a single python session. Fi...
Fixed a memory leak when numpy is used during file creation. Thanks to @pmarks for both finding and ...
matplotlib version pin has been removed, some colormap changes in cm.py for newer version. Some plot...
Fixed --plotNumbers not working in plotCorrelation. This was issue #838. Fixed compatibility with ma...
What's Changed new subcommand: Bigwig average #1169 dendogram of plotCorrelation now matches each c...
plotCoverage now has a --BED option, to restrict plots and output to apply to a specific set of regi...
Version 0.4.1 fixes a bug that occurred when multiple GLG tests were run in parallel with a shared f...
News for version 3.20.4 Fixed memory leaks in the libxml2-based DMR and DDX parsers. Moved more towa...
Add option to write a file as output for hicInfo Muting log output from matplotlib and cooler Update...
Fixed an issue with older versions of matplotlib where the default line width could crash the plot's...
v01-10 2019-01-31 Markus Frank (PR#480) Fix bug in geoDisplay to allow passing the volume display ...
Improving the documentation hicPlotMatrix: add three options: change font size, change rotation of X...
Version 0.3.0 Fixed bug due to changes in the OSX backend for matplotlib 2.0. Addressed deprecation...
Pinning dependencies to: hicmatrix version 9: API changes in version 10 krbalancing version 0.0.4: ...
Changed the package name from PileOMeth to MethylDackel. It is unfortunate that the temporary "PileO...