Changes in this version: The O3l and O3s loci had their names changed to O3/O3a and O3b, respectively, to match this recent study. Text in the README and code was updated where appropriate to more generally refer to 'locus' instead of 'K locus', now that Kaptive does O locus typing as well. Bug fixes: Fix crash with --no_seq_out Fix crash when there are no BLAST hits Fix Python 2 exception crash Fix potential collisions during simultaneous run
fix: setParam when multiple 'obj' values are changed at the same time (solves #350) (PR #352) getMod...
Major updates: New command-line argument "--synonymSequencePath" in order to supply additional refe...
ksrates is a tool to position whole-genome duplications relative to speciation events using substitu...
Updates to improve the logic for choosing the best match locus when there is a blastn coverage tie t...
Update to Klebsiella K locus primary reference database: Fixed annotation error for KL53: wcaJ --> w...
Updates / improvements in this version: Updated A. baumannii K locus database plus special logic fo...
Full Changelog: https://github.com/katholt/Kaptive/compare/v2.0.3...v2.0.4 Unicode errors in A. baum...
Lots of changes and improvements, including: Allelic typing (e.g. wzi and wzc) Support for both Pyt...
This release fixes strange behaviour in genomes that completely lack a target locus. Previously, Kap...
Addition of a novel K locus reference sequences (KL167-KL170) to the Klebsiella K locus primary refe...
Added databases for Acinetobacter baumannii K and OC loci. Updated READme description of databases
This release is functionally identical to the previous release. It just fixes a version number incon...
This release fixes the version mismatch between the release and running kaptive.py --version, but is...
Correction: Comparison of O-Antigen Gene Clusters of All O-Serogroups of <i>Escherichia coli</i> and...
VariantsOfInterest - fixed a bug which removes NAs from mean frequency calculation ...
fix: setParam when multiple 'obj' values are changed at the same time (solves #350) (PR #352) getMod...
Major updates: New command-line argument "--synonymSequencePath" in order to supply additional refe...
ksrates is a tool to position whole-genome duplications relative to speciation events using substitu...
Updates to improve the logic for choosing the best match locus when there is a blastn coverage tie t...
Update to Klebsiella K locus primary reference database: Fixed annotation error for KL53: wcaJ --> w...
Updates / improvements in this version: Updated A. baumannii K locus database plus special logic fo...
Full Changelog: https://github.com/katholt/Kaptive/compare/v2.0.3...v2.0.4 Unicode errors in A. baum...
Lots of changes and improvements, including: Allelic typing (e.g. wzi and wzc) Support for both Pyt...
This release fixes strange behaviour in genomes that completely lack a target locus. Previously, Kap...
Addition of a novel K locus reference sequences (KL167-KL170) to the Klebsiella K locus primary refe...
Added databases for Acinetobacter baumannii K and OC loci. Updated READme description of databases
This release is functionally identical to the previous release. It just fixes a version number incon...
This release fixes the version mismatch between the release and running kaptive.py --version, but is...
Correction: Comparison of O-Antigen Gene Clusters of All O-Serogroups of <i>Escherichia coli</i> and...
VariantsOfInterest - fixed a bug which removes NAs from mean frequency calculation ...
fix: setParam when multiple 'obj' values are changed at the same time (solves #350) (PR #352) getMod...
Major updates: New command-line argument "--synonymSequencePath" in order to supply additional refe...
ksrates is a tool to position whole-genome duplications relative to speciation events using substitu...
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