Data from: Feline immunodeficiency virus in puma: estimation of force of infection reveals insights into transmission

Determining parameters that govern pathogen transmission (such as the force of infection, FOI), and pathogen impacts on morbidity and mortality, is exceptionally challenging for wildlife. Vital parameters can vary, for example across host populations, between sexes and within an individual's lifetime. Feline immunodeficiency virus (FIV) is a lentivirus affecting domestic and wild cat species, forming species-specific viral--host associations. FIV infection is common in populations of puma (Puma concolor), yet uncertainty remains over transmission parameters and the significance of FIV infection for puma mortality. In this study the age-specific FOI of FIV in pumas was estimated from prevalence data, and the evidence for disease-associated mortality was assessed. We fitted candidate models to FIV prevalence data and adopted a maximum likelihood method to estimate parameter values in each model. The models with the best fit were determined to infer the most likely FOI curves. We applied this strategy for female and male pumas from southern California, Colorado, and Florida. When splitting the data by sex and area, our FOI modelling revealed no evidence of disease-associated mortality in any population. Both sex and location were found to influence the FOI, which was generally higher for male pumas than for females. For female pumas at all sites, and male pumas from California and Colorado, the FOI did not vary with puma age, implying FIV transmission can happen throughout life; this result supports the idea that transmission can occur from mothers to offspring and also throughout adult life. For Florida males, the FOI was a decreasing function of puma age, indicating an increased risk of infection in the early years, and a decreased risk at older ages. This research provides critical insight into pathogen transmission and impact in a secretive and solitary carnivore. Our findings shed light on the debate on whether FIV causes mortality in wild felids like puma, and our approach may be adopted for other diseases and species. The methodology we present can be used for identifying likely transmission routes of a pathogen and also estimating any disease-associated mortality, both of which can be difficult to establish for wildlife diseases in particular.FL_age_bins_FFlorida female puma data consisting of puma age (column 1) and FIV infection status (column 2)FL_age_bins_MFlorida male puma data consisting of puma age (column 1) and FIV infection status (column 2)OC_age_bins_FCalifornia (Orange County) female puma data consisting of puma age (column 1) and FIV infection status (column 2)OC_age_bins_MCalifornia (Orange County) male puma data consisting of puma age (column 1) and FIV infection status (column 2)WS_age_bins_FColorado (Western Slope) female puma data consisting of puma age (column 1) and FIV infection status (column 2)WS_age_bins_MColorado (Western Slope) male puma data consisting of puma age (column 1) and FIV infection status (column 2