Data from: Towards resolving and redefining Amphipyrinae (Lepidoptera, Noctuoidea, Noctuidae): a massively polyphyletic taxon

Amphipyrinae have long been a catchall taxon for Noctuidae, with most members lacking discernible morphological synapomorphies that would allow their assignment to one of the many readily diagnosable noctuid subfamilies. Here data from seven gene regions (>5,500 base pairs) for more than 120 noctuid genera are used to infer a phylogeny for Amphipyrinae and related subfamilies. Sequence data for 57 amphipyrine genera—most represented by the type species of the genus—are examined. Presented here are: the first large-scale molecular phylogenetic study of Amphipyrinae and largest molecular phylogeny of Noctuidae to date; several proposed nomenclatural changes for well supported results; and the identification of areas of noctuid phylogeny where greater taxon sampling and/or genomic-scale data are needed. Adult and larval morphology, along with life history traits, for taxonomic groupings most relevant to the results are discussed. Amphipyrinae are significantly redefined; many former amphipyrines, excluded as a result of these analyses, are reassigned to other noctuid subfamily-level taxa. Four genera, Chamaeclea Grote, Heminocloa Barnes & Benjamin, Hemioslaria Barnes & Benjamin, and Thurberiphaga Dyar are transferred to the tribe Chamaecleini Keegan & Wagner New Tribe in Acontiinae. Stiriina is elevated to Stiriinae Revised Status, Grotellina is elevated to Grotellinae Revised Status, and Annaphilina is elevated to Annaphilini Revised Status. Acopa Harvey is transferred to Bryophilinae, Aleptina Dyar is transferred to Condicinae, Leucocnemis Hampson and Oxycnemis gracillinea (Grote) are transferred to Oncocnemidinae, Nacopa Barnes & Benjamin is transferred to Noctuinae, and Narthecophora Smith is transferred to Stiriinae. Azenia Grote (and its subtribe Azeniina), Cropia Walker, Metaponpneumata Möschler, Sexserrata Barnes & Benjamin, and Tristyla Smith are transferred to Noctuidae incertae sedis. Hemigrotella Barnes & McDunnough (formerly in subtribe Grotellina) is retained in Amphipyrinae.IQ-TREE_alignmentNucleotide alignment used in IQ-TREE model finding and phylogenetic inference.IQ-TREE_outputFull output of IQ-TREE model finding and phylogenetic inferenceIQ-TREE_partitionPartition file for IQ-TREE model finding and phylogenetic inferenceIQ-TREE_treeMaximum likelihood tree with nodal support values from IQ-TREE phylogenetic inferenceMrBayes_inputNEXUS file used as input for MrBayes phylogenetic inference containing alignment, partition scheme, and inference settingsMrBayes_logLog file from MrBayes phylogenetic inferenceMrBayes_treesTree file from MrBayes phylogenetic inference containing 50% majority rule consensus tree without posterior clade probabilities, and 50% majority rule consensus tree with posterior clade probabilitiesMrBayes_tree.txtRAxML_alignmentNucleotide alignment used in RAxML phylogenetic inferenceRAxML_logLog file from RAxML phylogenetic inferenceRAxML_partitionPartition file used in RAxML phylogenetic inferenceRAxML_treeMaximum likelihood tree with bootstraps from RAxML phylogenetic inferenceTable_S1_SuppInfoVoucher codes, taxonomy, sequence accession numbers, and percent ambiguities for genes. Deposition and collection information is provided for specimens newly collected for this study.Table_S1.xl