Gene expression profiles and microRNA regulation networks in tiller primordia, stem tips and young spikes of wheat Guomai 301

Supplementary Tables and Supplementary Figures Figure S1: The PCA map among the samples of transcriptome sequencing; Figure S2: The two-dimensional map of PCA among the transcriptome sequencing samples; Figure S3: PCC analysis of the transcriptome sequencing samples; Figure S4: Distribution map of the identified miRNAs with different lengths; Figure S5: The PCA map among the samples of miRNA sequencing; Figure S6: The two-dimensional map of PCA among the miRNA sequencing samples; Figure S7: PCC analysis of the small RNA sequencing samples; Figure S8: A part of the 372 negative miRNA-mRNA interaction pairs (regulation network) in TPs; Figure S9: A part of the 279 negative miRNA-mRNA interaction pairs (regulation network) in YSs; Table S1: The primers used in real time QRT-PCR; Table S2: Statistics of the transcriptome sequencing data; Table S3: Statistics of the function annotation of the new genes; Table S4: The alignment of the transcriptome sequencing data with the reference genome; Table S5: Statistic result of each miRNA sequencing sample; Table S6: The statistics of the miRNA sequencing data; Table S7: The alignment of the miRNA sequencing data with the reference genome; Table S8: The sequences of the identified miRNAs; Table S9: The information of the enriched pathways between TP and YS referred to KEGG database; Table S10: Specifically expressed genes in TPs, STs and YSs, respectively; Table S11: Major ten terms for the gene enrichment in GO database in TPs, STs and YSs, respectively; Table S12: DEGs classified by k-means clustering (k = 6) ; Table S13: The metabolic pathway referred to KEGG of the six clusters; Table S14: The gene involved in plant hormone signal transduction pathways of clusters K1, K3 and K6; Table S15: DE miRNAs between TPs and YSs; Table S16: Specifically expressed miRNAs in TPs, STs and YSs, respectively; Table S17: The negative miRNA-mRNA interaction between TP and YS; Table S18: The high expressed genes related to plant hormone in TPs and YSs; Table S19: The DEGs belong to TFs in the six clusters K1-K6