This data set contains the data from the simulations of Escherichia coli colonies. The data were generated using the Whole-Cell E. coli Model with DOI 10.5281/zenodo.4695018. It may be analyzed using the wcecoli-colony-analysis repository on GitHub. See that repository's README file for instructions. This data set has been assigned the following DOI: 10.5281/zenodo.4697519. It is available under a Creative Commons Attribution 4.0 International License which is included in LICENSE.txt. See the README.md file for more information
This dataset contains the E. coli sequences (assembled with shovill v0.9.0), their sequence type 131...
EcoCyc (http://EcoCyc.org) is a model organism database built on the genome sequence of Escherichia ...
The common intestinal bacterium Escherichia coli is without any doubt the best-studied organism in t...
Data from simulations used to generate the figures in the paper Whole-cell modeling of E. coli colon...
This release snapshot goes with the paper entitled Whole-cell modeling of E. coli colonies enables q...
The file includes the raw-data used to calculate the coefficient of variation of E. coli cell length...
This zipped file, SimuData.Zip, contains 5 folders, named as “Allele”, “Dup”, “Err”, “Loci”, “Robust...
Details of gene expression data sets for model organisms E. coli, S. cerevisiae, as well as in silic...
The folder contains files needed perform the analysis described in “Resistance Gene Carriage Predict...
The sets of compounds that can support growth of an organism are defined by the presence of transpor...
This dataset is the source code of the final project in BEBI5009 Modeling and Simulation in Systems ...
Escherichia coli K-12 is an ideal test bed for pushing forward the limits of our ability to underst...
This file contains simulation data used in Schmitz et al. (2023) "Predicting bacterial interaction o...
This data supports the publication "Polysaccharide metabolism regulates structural colour in bacteri...
Supporting Information. The file contains two text sections detailing the equations and parameters u...
This dataset contains the E. coli sequences (assembled with shovill v0.9.0), their sequence type 131...
EcoCyc (http://EcoCyc.org) is a model organism database built on the genome sequence of Escherichia ...
The common intestinal bacterium Escherichia coli is without any doubt the best-studied organism in t...
Data from simulations used to generate the figures in the paper Whole-cell modeling of E. coli colon...
This release snapshot goes with the paper entitled Whole-cell modeling of E. coli colonies enables q...
The file includes the raw-data used to calculate the coefficient of variation of E. coli cell length...
This zipped file, SimuData.Zip, contains 5 folders, named as “Allele”, “Dup”, “Err”, “Loci”, “Robust...
Details of gene expression data sets for model organisms E. coli, S. cerevisiae, as well as in silic...
The folder contains files needed perform the analysis described in “Resistance Gene Carriage Predict...
The sets of compounds that can support growth of an organism are defined by the presence of transpor...
This dataset is the source code of the final project in BEBI5009 Modeling and Simulation in Systems ...
Escherichia coli K-12 is an ideal test bed for pushing forward the limits of our ability to underst...
This file contains simulation data used in Schmitz et al. (2023) "Predicting bacterial interaction o...
This data supports the publication "Polysaccharide metabolism regulates structural colour in bacteri...
Supporting Information. The file contains two text sections detailing the equations and parameters u...
This dataset contains the E. coli sequences (assembled with shovill v0.9.0), their sequence type 131...
EcoCyc (http://EcoCyc.org) is a model organism database built on the genome sequence of Escherichia ...
The common intestinal bacterium Escherichia coli is without any doubt the best-studied organism in t...