1.6.4 Benchmarking paper for 16S Metabarcoding of meat products is online: Denay, G.; Preckel, L.; Petersen, H.; Pietsch, K.; Wöhlke, A.; Brünen-Nieweler, C. Benchmarking and Validation of a Bioinformatics Workflow for Meat Species Identification Using 16S rDNA Metabarcoding. Foods 2023, 12, 968. https://doi.org/10.3390/foods12050968 New features It is now possible to filter specific sequences form the database using a list of accession provided in a text file using the seq_blocklist parameter (#60). Improvements Taxa names are now displayed in the benchmarking report Fixed many typos and errors in the documentation Improved report aesthetics Improved the fetch_nt_blast.sh script to make it easier to resume interupted processes, also m...
The food spoilage process is mainly caused by alteration micro-organisms and classical culture-based...
Foodborne illnesses associated with pathogenic bacteria are a global public health and economic chal...
Steak tartare is a popular meat dish in Belgium and other european countries. It is often consumed w...
The growing demand for poultry meat and the complexity of the supply chain affect traceability. Ther...
The substitution of more appreciated animal species by animal species of lower commercial value is a...
Meat species authentication in food is most commonly based on the detection of genetic variations. O...
Processed meat is a target in meat adulteration for economic gain. This study demonstrates a molecul...
New sequencing technologies allowed the development of methods such as metabarcoding. They use 16S r...
International audienceNext generation sequencing offers several ways to study microbial communities....
Metabarcoding studies provide a powerful approach to estimate the diversity and abundance of organis...
International audienceNext generation sequencing offers several ways to study microbial communities....
Sequencing data are available in NCBI SRA repository under the Bioproject number PRJNA685292.636.Scr...
Metagenomic analysis is a new culture-independent approach for assigning a taxonomic, genic or funct...
Book chapter published in Meat Quality Analysis published by ElsevierDNA-based molecular techniques ...
In this study, we tested the Ion Torrent next generation semiconductor based sequencing technology f...
The food spoilage process is mainly caused by alteration micro-organisms and classical culture-based...
Foodborne illnesses associated with pathogenic bacteria are a global public health and economic chal...
Steak tartare is a popular meat dish in Belgium and other european countries. It is often consumed w...
The growing demand for poultry meat and the complexity of the supply chain affect traceability. Ther...
The substitution of more appreciated animal species by animal species of lower commercial value is a...
Meat species authentication in food is most commonly based on the detection of genetic variations. O...
Processed meat is a target in meat adulteration for economic gain. This study demonstrates a molecul...
New sequencing technologies allowed the development of methods such as metabarcoding. They use 16S r...
International audienceNext generation sequencing offers several ways to study microbial communities....
Metabarcoding studies provide a powerful approach to estimate the diversity and abundance of organis...
International audienceNext generation sequencing offers several ways to study microbial communities....
Sequencing data are available in NCBI SRA repository under the Bioproject number PRJNA685292.636.Scr...
Metagenomic analysis is a new culture-independent approach for assigning a taxonomic, genic or funct...
Book chapter published in Meat Quality Analysis published by ElsevierDNA-based molecular techniques ...
In this study, we tested the Ion Torrent next generation semiconductor based sequencing technology f...
The food spoilage process is mainly caused by alteration micro-organisms and classical culture-based...
Foodborne illnesses associated with pathogenic bacteria are a global public health and economic chal...
Steak tartare is a popular meat dish in Belgium and other european countries. It is often consumed w...