Extraction of chemical structures from literature and patent documents using open access chemistry toolkits: a case study with PFAS

Mietchen, Daniel

October 2020

Note: the video is also available on Youtube via https://youtu.be/aM2pUMvg81o . Title Open profili...

40 million open chemical structures from patents: treasure trove? junk yard? or both?

Christopher Southan

June 2022

Poster for International Conference on Chemical Structures: ICCS, June 2022 Compared to the li...

ssChemistry Central Journal Open AcceMethodology Automated extraction of chemical structure information from digital raster images

Jungkap Park
Gus R Rosania
Kerby A Shedden
Ee Nguyen
Naesung Lyu
Kazuhiro Saitou

August 2015

Background: To search for chemical structures in research articles, diagrams or text representing mo...

Extraction of Chemical Structures from Literature and Patent Documents using Open Access Chemistry Toolkits: A Case Study with PFAS

Shadrack, Barnabas
Timo, Böhme
Stephen, Boyer
Matthias, Irmer
Christoph, Ruttkies
Ian, Wetherbee
Todor, Kondic
Emma, Schymanski
Lutz, Weber

May 2022

The extraction of chemical information from documents is a demanding task in cheminformatics due to ...

Extraction of chemical structures from literature and patent documents using open access chemistry toolkits: a case study with PFAS

Barnabas, Shadrack J.
Böhme, Timo
Boyer, Stephen K.
Irmer, Matthias
Ruttkies, Christoph
Wetherbee, Ian
Kondic, Todor
Schymanski, Emma
Weber, Lutz

January 2022

peer reviewedExtracting PFAS with open source cheminformatics toolkits reveals ~1.78 million PFAS in...

Data Enhancing the RSC Archive

Antony Williams (96443)
Colin Batchelor (393805)
Ken Karapetyan (393806)
Alexey Pshenichnov (390092)
David Sharpe (393804)
Jon Steele (401257)
Valery Tkachenko (96619)

April 2013

The Royal Society of Chemistry has an archive of published journals and books stretching back to ...

Mining chemical information from open patents

Jessop David M
Adams Sam E
Murray-Rust Peter

October 2011

Abstract Linked Open Data presents an opportunity to vastly improve the quality of science in all fi...

Mining chemical information from open patents.

Jessop, David M
Adams, Sam E
Murray-Rust, Peter

October 2011

Linked Open Data presents an opportunity to vastly improve the quality of science in all fields by i...

Royal Society of Chemistry Activities to Develop a Data Repository for Chemistry-Specific Data

Antony Williams (96443)
Aileen Day (541204)
Ken Karapetyan (393806)
Colin Batchelor (393805)
Peter Corbett (541104)
Jon Steele (401257)
Valery Tkachenko (96619)

March 2014

The Royal Society of Chemistry publishes many thousands of articles per year, the majority of the...

(page number not for citation purposes) Chemistry Central Journal Open AccessOral presentation Using chemical structure in open-source chemical text mining

Pt Corbett
P Murray-rust

August 2015

A great wealth of chemical information is to be found in the literature. For example, PubMed contain...

Mining chemical information from Open patents

Jessop, David M
Adams, Sam E
Murray-Rust, Peter

October 2011

RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/...

How Open and FAIR Cheminformatics can Support the Discovery, Analysis and Assessment of PFAS

Schymanski, Emma
Chirsir, Parviel
Zhang, Jian
Thiessen, Paul
Helmus, Rick
Sadia, Mohammad
van Wezel, Annemarie
Bolton, Evan

May 2022

Presentation in the " Poly- and perfluoroalkyl substances (PFASs): Addressing Urgent Questions in th...

Automated Identification and Conversion of Chemical Names to Structure Searchable Information

Antony Williams (96443)

March 2013

The communication of chemistry-related information occurs both via print and electronic media and...

Royal Society of Chemistry developments to support open drug discovery

Antony Williams (96443)
Ken Karapetyan (393806)
Valery Tkachenko (96619)
Colin Batchelor (393805)
Alexey Pshenichnov (390092)
Jon Steele (401257)

March 2014

In recent years the Royal Society of Chemistry has become known for our development of freely acc...

Information extraction and linked open data in chemistry

Hawizy, Lezan
Adams, Nico
Downing, Jim
Murray-Rust, Peter

Chemists not only produce a significant amount of data-rich scholarly communication artifacts, but h...

Open profiling of chemical knowledge

Mietchen, Daniel

October 2020

Note: the video is also available on Youtube via https://youtu.be/aM2pUMvg81o . Title Open profili...

40 million open chemical structures from patents: treasure trove? junk yard? or both?

Christopher Southan

June 2022

Poster for International Conference on Chemical Structures: ICCS, June 2022 Compared to the li...

ssChemistry Central Journal Open AcceMethodology Automated extraction of chemical structure information from digital raster images

Jungkap Park
Gus R Rosania
Kerby A Shedden
Ee Nguyen
Naesung Lyu
Kazuhiro Saitou

August 2015

Background: To search for chemical structures in research articles, diagrams or text representing mo...

Extraction of Chemical Structures from Literature and Patent Documents using Open Access Chemistry Toolkits: A Case Study with PFAS

Shadrack, Barnabas
Timo, Böhme
Stephen, Boyer
Matthias, Irmer
Christoph, Ruttkies
Ian, Wetherbee
Todor, Kondic
Emma, Schymanski
Lutz, Weber

May 2022

The extraction of chemical information from documents is a demanding task in cheminformatics due to ...

Extraction of chemical structures from literature and patent documents using open access chemistry toolkits: a case study with PFAS

Barnabas, Shadrack J.
Böhme, Timo
Boyer, Stephen K.
Irmer, Matthias
Ruttkies, Christoph
Wetherbee, Ian
Kondic, Todor
Schymanski, Emma
Weber, Lutz

January 2022

peer reviewedExtracting PFAS with open source cheminformatics toolkits reveals ~1.78 million PFAS in...

Data Enhancing the RSC Archive

Antony Williams (96443)
Colin Batchelor (393805)
Ken Karapetyan (393806)
Alexey Pshenichnov (390092)
David Sharpe (393804)
Jon Steele (401257)
Valery Tkachenko (96619)

April 2013

The Royal Society of Chemistry has an archive of published journals and books stretching back to ...

Mining chemical information from open patents

Jessop David M
Adams Sam E
Murray-Rust Peter

October 2011

Abstract Linked Open Data presents an opportunity to vastly improve the quality of science in all fi...

Mining chemical information from open patents.

Jessop, David M
Adams, Sam E
Murray-Rust, Peter

October 2011

Linked Open Data presents an opportunity to vastly improve the quality of science in all fields by i...

Royal Society of Chemistry Activities to Develop a Data Repository for Chemistry-Specific Data

Antony Williams (96443)
Aileen Day (541204)
Ken Karapetyan (393806)
Colin Batchelor (393805)
Peter Corbett (541104)
Jon Steele (401257)
Valery Tkachenko (96619)

March 2014

The Royal Society of Chemistry publishes many thousands of articles per year, the majority of the...

(page number not for citation purposes) Chemistry Central Journal Open AccessOral presentation Using chemical structure in open-source chemical text mining

Pt Corbett
P Murray-rust

August 2015

A great wealth of chemical information is to be found in the literature. For example, PubMed contain...

Mining chemical information from Open patents

Jessop, David M
Adams, Sam E
Murray-Rust, Peter

October 2011

RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/...

How Open and FAIR Cheminformatics can Support the Discovery, Analysis and Assessment of PFAS

Schymanski, Emma
Chirsir, Parviel
Zhang, Jian
Thiessen, Paul
Helmus, Rick
Sadia, Mohammad
van Wezel, Annemarie
Bolton, Evan

May 2022

Presentation in the " Poly- and perfluoroalkyl substances (PFASs): Addressing Urgent Questions in th...

Automated Identification and Conversion of Chemical Names to Structure Searchable Information

Antony Williams (96443)

March 2013

The communication of chemistry-related information occurs both via print and electronic media and...

Royal Society of Chemistry developments to support open drug discovery

Antony Williams (96443)
Ken Karapetyan (393806)
Valery Tkachenko (96619)
Colin Batchelor (393805)
Alexey Pshenichnov (390092)
Jon Steele (401257)

March 2014

In recent years the Royal Society of Chemistry has become known for our development of freely acc...

Information extraction and linked open data in chemistry

Hawizy, Lezan
Adams, Nico
Downing, Jim
Murray-Rust, Peter

Chemists not only produce a significant amount of data-rich scholarly communication artifacts, but h...

Open profiling of chemical knowledge

Mietchen, Daniel

October 2020

Note: the video is also available on Youtube via https://youtu.be/aM2pUMvg81o . Title Open profili...

40 million open chemical structures from patents: treasure trove? junk yard? or both?

Christopher Southan

June 2022

Poster for International Conference on Chemical Structures: ICCS, June 2022 Compared to the li...

ssChemistry Central Journal Open AcceMethodology Automated extraction of chemical structure information from digital raster images

Jungkap Park
Gus R Rosania
Kerby A Shedden
Ee Nguyen
Naesung Lyu
Kazuhiro Saitou

August 2015

Background: To search for chemical structures in research articles, diagrams or text representing mo...

Extraction of chemical structures from literature and patent documents using open access chemistry toolkits: a case study with PFAS

Abstract

Extracted data

Extraction of chemical structures from literature and patent documents using open access chemistry toolkits: a case study with PFAS

Abstract

Extracted data

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