This dataset includes test data for RonaQC RonaQC accepts mapped SARS-CoV-2 reads (BAM format), generated from the SARS-CoV-2 bioinformatic pipelines like ARTIC, and any control samples from the respective sequencing run (negative/positive) as input. It will then assess the levels of cross contamination and primer contamination in the samples, and determine if the samples are reliable for detecting SARS-CoV-2, phylogenetic analysis, and/or submission to public databases. The dataset includes SARS-CoV-2 sequenced reads compiled by CDCgov/datasets-sars-cov-2 [1]. These were reads were processed using the ncov2019-artic-nf pipelines, which is a Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools, with a focus on nc...
Background: The rise of new SARS-CoV-2 variants worldwide requires global molecular surveillance str...
Number of positive tests, SGTF dropouts and B117 sequences at Helix from Oct 15, 2020 to Feb 19, 202...
Since the beginning of the SARS-CoV-2 pandemic, supply chain shortages have caused major disruptions...
[Description of methods used for collection/generation of data] Viral samples were sequenced in the ...
a RT-PCR cycle thresholds predicting SARS-CoV-2 sequence read quality. Comparison of RT-PCR cycle th...
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the seventh identified coronavirus t...
Although many laboratories worldwide have developed their sequencing capacities in response to the n...
Effectively monitoring global infectious disease crises, such as the COVID-19 pandemic, requires cap...
Processed simulation data files for: SARS-CoV-2 diagnostic testing rates determine the sensitivity o...
The current COronaVIrus Disease 2019 (COVID-19) pandemic started in December 2019. COVID-19 cases ar...
The SARS-CoV-2 pandemic has created an unprecedented need for rapid large-scale diagnostic testing t...
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) first emerged in late 2019, and quickly...
SARS-CoV-2 is a new virus from the Coronaviridae family and its rapid spread is now the most importa...
Abstract: Coronaviruses (CoVs) refer to one of the RNA virus infections can showed as one of disease...
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) is a newly emerging virus well known as...
Background: The rise of new SARS-CoV-2 variants worldwide requires global molecular surveillance str...
Number of positive tests, SGTF dropouts and B117 sequences at Helix from Oct 15, 2020 to Feb 19, 202...
Since the beginning of the SARS-CoV-2 pandemic, supply chain shortages have caused major disruptions...
[Description of methods used for collection/generation of data] Viral samples were sequenced in the ...
a RT-PCR cycle thresholds predicting SARS-CoV-2 sequence read quality. Comparison of RT-PCR cycle th...
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the seventh identified coronavirus t...
Although many laboratories worldwide have developed their sequencing capacities in response to the n...
Effectively monitoring global infectious disease crises, such as the COVID-19 pandemic, requires cap...
Processed simulation data files for: SARS-CoV-2 diagnostic testing rates determine the sensitivity o...
The current COronaVIrus Disease 2019 (COVID-19) pandemic started in December 2019. COVID-19 cases ar...
The SARS-CoV-2 pandemic has created an unprecedented need for rapid large-scale diagnostic testing t...
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) first emerged in late 2019, and quickly...
SARS-CoV-2 is a new virus from the Coronaviridae family and its rapid spread is now the most importa...
Abstract: Coronaviruses (CoVs) refer to one of the RNA virus infections can showed as one of disease...
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) is a newly emerging virus well known as...
Background: The rise of new SARS-CoV-2 variants worldwide requires global molecular surveillance str...
Number of positive tests, SGTF dropouts and B117 sequences at Helix from Oct 15, 2020 to Feb 19, 202...
Since the beginning of the SARS-CoV-2 pandemic, supply chain shortages have caused major disruptions...