ivar trim now has -x flag to specify an offset to search for primer positions. This allows for trimming of primer sequences with sequencing artifacts
<p>Two heterozygous causative variants A) <i>BRCA1</i> c.3671_3672insCTTC and B) <i>BRCA2</i> c.2918...
Changes Adds an optional step to trim primers when a bed with primer regions is provided with --pri...
Triangles in color indicate the deletion of amino acids at specific residue positions. Arrowheads sh...
iVar v1.0 has the following functions. Trimming primer sequences and low quality Call variants Filt...
ivar trim now has -k flag to mark all reads that fail filters as BAM_FQCFAIL and write to output BAM...
Fixed bug (#36) if deletion at final position of primer region. BED file (-b) now optional for ivar ...
Removed excess insertionSort calls in PR #155 to address speed issues in ivar trim from issue #154 ...
What's Changed New parameter added to consensus calling to allow insertions to be called at a diffe...
Fixed #42 which occurs with single end reads that span only one primer. Added tests for edge cases...
What's Changed fix for ivar trim hanging with -f parameter by @cmaceves in https://github.com/ander...
A combination of a forward and reverse primers from the table were used for a targeted sequencing fo...
Discarded quality checks for INDELS. Added -e flag to allow reads without primers to go through
Fixes Corrects parsing of the trim_primers_3end parameter (#64) Added a primer disambiguation step ...
Check and ignore unmapped reads Updated default consensus to -m 1- -n N Check BED file format GFF3 l...
Version 0.6.8 Added new option --stranded_illumina to allow trimming of the adapter sequence ACTGTC...
<p>Two heterozygous causative variants A) <i>BRCA1</i> c.3671_3672insCTTC and B) <i>BRCA2</i> c.2918...
Changes Adds an optional step to trim primers when a bed with primer regions is provided with --pri...
Triangles in color indicate the deletion of amino acids at specific residue positions. Arrowheads sh...
iVar v1.0 has the following functions. Trimming primer sequences and low quality Call variants Filt...
ivar trim now has -k flag to mark all reads that fail filters as BAM_FQCFAIL and write to output BAM...
Fixed bug (#36) if deletion at final position of primer region. BED file (-b) now optional for ivar ...
Removed excess insertionSort calls in PR #155 to address speed issues in ivar trim from issue #154 ...
What's Changed New parameter added to consensus calling to allow insertions to be called at a diffe...
Fixed #42 which occurs with single end reads that span only one primer. Added tests for edge cases...
What's Changed fix for ivar trim hanging with -f parameter by @cmaceves in https://github.com/ander...
A combination of a forward and reverse primers from the table were used for a targeted sequencing fo...
Discarded quality checks for INDELS. Added -e flag to allow reads without primers to go through
Fixes Corrects parsing of the trim_primers_3end parameter (#64) Added a primer disambiguation step ...
Check and ignore unmapped reads Updated default consensus to -m 1- -n N Check BED file format GFF3 l...
Version 0.6.8 Added new option --stranded_illumina to allow trimming of the adapter sequence ACTGTC...
<p>Two heterozygous causative variants A) <i>BRCA1</i> c.3671_3672insCTTC and B) <i>BRCA2</i> c.2918...
Changes Adds an optional step to trim primers when a bed with primer regions is provided with --pri...
Triangles in color indicate the deletion of amino acids at specific residue positions. Arrowheads sh...
DOI
Add to ORKG