Sung-Huan/ANNOgesic: ANNOgesic version 1.0.17
- Konrad Förstner
- Pavel Sinitcyn
- Sung-Huan (Silas) Yu
Publication date
November 2020
DOIAbstract
make wig format without span information acceptable for running fix the bug with gff compariso
make wig format without span information acceptable for running fix the bug with gff compariso
Extend the function of tss_ps for using optimized parameters from optimize_tss_ps directly. The user...
fix the error of annotation transfer due to the wrong path of the embl folder adapt sRNA target pred...
Fix the error of using TSS file which is not from ANNOgesic for predicting sRNAs. Add code for check...
fix a bug of converting gff to rnt and pttIf you use ANNOgesic, please cite it as below
Fix a bug for UTR detection - the same starting point and end point between CDS and transcript
fix the problem which conflict in root folder. fix the error of annotation transfer
Add a bug checking program for sRNA detection. Add a cutoff of bit score of Blast for sRNA detection
Add the function for parsing old format of refseq ("|" contained). Making the output filename of usi...
Fixed the error of post-modification of transcript detection. Updated the code to fit the Vienna RNA...
Fix the error of checking overlapping regions for sRNA detection. Update licence
ANNOgesic - The pipeline for bacterial/archaeal RNA-Seq based genome annotations
Fix the error of checking overlap TSSs for multiple accession numbers. Fix the error of parameter ty...
Add the module for parsing the IDs containing underline for sRNA target prediction. Fix the error fo...
add the statement for checking IntaRNA results and remove the lines which missing the required infor...
fix merging transcript of dRNA and fragmented RNA. fix terminator overlaps with genes
Extend the function of tss_ps for using optimized parameters from optimize_tss_ps directly. The user...
fix the error of annotation transfer due to the wrong path of the embl folder adapt sRNA target pred...
Fix the error of using TSS file which is not from ANNOgesic for predicting sRNAs. Add code for check...
fix a bug of converting gff to rnt and pttIf you use ANNOgesic, please cite it as below
Fix a bug for UTR detection - the same starting point and end point between CDS and transcript
fix the problem which conflict in root folder. fix the error of annotation transfer
Add a bug checking program for sRNA detection. Add a cutoff of bit score of Blast for sRNA detection
Add the function for parsing old format of refseq ("|" contained). Making the output filename of usi...
Fixed the error of post-modification of transcript detection. Updated the code to fit the Vienna RNA...
Fix the error of checking overlapping regions for sRNA detection. Update licence
ANNOgesic - The pipeline for bacterial/archaeal RNA-Seq based genome annotations
Fix the error of checking overlap TSSs for multiple accession numbers. Fix the error of parameter ty...
Add the module for parsing the IDs containing underline for sRNA target prediction. Fix the error fo...
add the statement for checking IntaRNA results and remove the lines which missing the required infor...
fix merging transcript of dRNA and fragmented RNA. fix terminator overlaps with genes
Extend the function of tss_ps for using optimized parameters from optimize_tss_ps directly. The user...
fix the error of annotation transfer due to the wrong path of the embl folder adapt sRNA target pred...
Fix the error of using TSS file which is not from ANNOgesic for predicting sRNAs. Add code for check...
Add to ORKG