Sung-Huan/ANNOgesic: ANNOgesic version 1.0.12
- Sung-Huan (Silas) Yu
- Konrad Förstner
- Pavel Sinitcyn
Publication date
May 2020
DOIAbstract
fix the problem which conflict in root folder. fix the error of annotation transfer
fix the problem which conflict in root folder. fix the error of annotation transfer
add the statement for checking IntaRNA results and remove the lines which missing the required infor...
fix the error of annotation transfer due to the wrong path of the embl folder adapt sRNA target pred...
Add a bug checking program for sRNA detection. Add a cutoff of bit score of Blast for sRNA detection
Fix a bug for UTR detection - the same starting point and end point between CDS and transcript
Fix the error of checking overlapping regions for sRNA detection. Update licence
fix merging transcript of dRNA and fragmented RNA. fix terminator overlaps with genes
Fixed the error of post-modification of transcript detection. Updated the code to fit the Vienna RNA...
make wig format without span information acceptable for running fix the bug with gff compariso
Fix the error of checking overlap TSSs for multiple accession numbers. Fix the error of parameter ty...
Fix the error of using TSS file which is not from ANNOgesic for predicting sRNAs. Add code for check...
ANNOgesic - The pipeline for bacterial/archaeal RNA-Seq based genome annotations
Extend the function of tss_ps for using optimized parameters from optimize_tss_ps directly. The user...
fix the error of type matching for sRNA overlap checking, assign to float exclude the ID checking fo...
fix a bug of converting gff to rnt and pttIf you use ANNOgesic, please cite it as below
Add the module for parsing the IDs containing underline for sRNA target prediction. Fix the error fo...
add the statement for checking IntaRNA results and remove the lines which missing the required infor...
fix the error of annotation transfer due to the wrong path of the embl folder adapt sRNA target pred...
Add a bug checking program for sRNA detection. Add a cutoff of bit score of Blast for sRNA detection
Fix a bug for UTR detection - the same starting point and end point between CDS and transcript
Fix the error of checking overlapping regions for sRNA detection. Update licence
fix merging transcript of dRNA and fragmented RNA. fix terminator overlaps with genes
Fixed the error of post-modification of transcript detection. Updated the code to fit the Vienna RNA...
make wig format without span information acceptable for running fix the bug with gff compariso
Fix the error of checking overlap TSSs for multiple accession numbers. Fix the error of parameter ty...
Fix the error of using TSS file which is not from ANNOgesic for predicting sRNAs. Add code for check...
ANNOgesic - The pipeline for bacterial/archaeal RNA-Seq based genome annotations
Extend the function of tss_ps for using optimized parameters from optimize_tss_ps directly. The user...
fix the error of type matching for sRNA overlap checking, assign to float exclude the ID checking fo...
fix a bug of converting gff to rnt and pttIf you use ANNOgesic, please cite it as below
Add the module for parsing the IDs containing underline for sRNA target prediction. Fix the error fo...
add the statement for checking IntaRNA results and remove the lines which missing the required infor...
fix the error of annotation transfer due to the wrong path of the embl folder adapt sRNA target pred...
Add a bug checking program for sRNA detection. Add a cutoff of bit score of Blast for sRNA detection
Add to ORKG