Effect of local topography on cell division of Staphylococci sp.

Dataset.zip This dataset includes the raw and annotated images used to train a Stardist 2D deep learning model for segmentation of surface attached S.aureus as described in Effect of local topography on cell division of Staphylococci sp. Stardist2d_Model.zip Stardist 2D deep learning model for segmentation of surface attached S.aureus, obtained using the StarDist 2D ZeroCostDL4Mic notebook (v 1.12.3).If you find this data useful, please cite: - Main Article: Effect of local topography on cell division of Staphylococci sp. - In progress - ZeroCostDL4Mic: von Chamier, Lucas & Laine, Romain, et al. "Democratising deep learning for microscopy with ZeroCostDL4Mic." Nature Communications (2021). - StarDist 2D: Schmidt, Uwe, et al. "Cell detection with star-convex polygons." International Conference on Medical Image Computing and Computer-Assisted Intervention. Springer, Cham, 2018. - Augmentor: Bloice, Marcus D., Christof Stocker, and Andreas Holzinger. "Augmentor: an image augmentation library for machine learning." arXiv preprint arXiv:1708.04680 (2017)