What's Changed new features / behavior new read_depths workflow by @lakras in #393 tsv_join task: add option to control preference of input order (left or right join) by @dpark01 in #400 optimizations / vm tuning parameterize memory for tasks_nextstrain.tip_frequencies task; increase default to 30GB by @tomkinsc in #398 docker image updates bump panoglin 3.1.16 -> 3.1.17 and nextclade 1.4.0 -> 1.7.0 by @dpark01 in #399 update pangoLEARN, pango-designation, scorpio, constellations by @dpark01 in #401 update vadr 1.3 -> 1.4 by @dpark01 in #402 update pangoLEARN, pango-designation, constellations; update vadr 1.4 -> 1.4.1 by @dpark01 in #403 Full Changelog https://github.com/broadinstitute/viral-pipelines/compare/v2.1.33.1...v2.1.33.
new features: new workflow sarscov2_nextstrain [#204, #208, #219] updates to genbank submission [#2...
improvements: sarscov2_biosample_load workflow: stop using today's date in constructing ftp directo...
What's Changed docker image updates nextclade 1.7.0 to 1.10.0 by @dpark01 in #404 pangolin containe...
What's Changed Feature changes CDC SC2 viral pipeline updates (parameters, reporting, QC) by @dpark...
What's Changed new features turn on allowNestedInputs for subworkflows: this exposes to the end-use...
What's Changed new and changed workflows Add workflow for QIIME2 classification of 16S reads by @go...
What's Changed functionality changes and bug fixes Convert amplicon16S_analysis workflow (QIIME) fr...
What's Changed Feature changes task alignment_metrics: more resilient to large amplicon designs by ...
What's Changed lofreq task portability, misc other edits by @dpark01 in #426 Full Changelog: https...
What's Changed increase tsv_join default mem 7->15 GB by @tomkinsc in #406 update pangolin containe...
What's Changed incorporate assemble_refbased as refine/polish for denovo by @dpark01 in #422 new me...
What's Changed sc2 sequencing report ram and pangolin update fault tolerance by @dpark01 in #410 pa...
What's Changed new features robustness: allow one retry for gisaid uploader [#395] optimizations ...
What's Changed update pangolin and nextclade docker images by @dpark01 in #409 Full Changelog: htt...
new features: most task runtime blocks now support cromwell auto memory scaling/retry automated dat...
new features: new workflow sarscov2_nextstrain [#204, #208, #219] updates to genbank submission [#2...
improvements: sarscov2_biosample_load workflow: stop using today's date in constructing ftp directo...
What's Changed docker image updates nextclade 1.7.0 to 1.10.0 by @dpark01 in #404 pangolin containe...
What's Changed Feature changes CDC SC2 viral pipeline updates (parameters, reporting, QC) by @dpark...
What's Changed new features turn on allowNestedInputs for subworkflows: this exposes to the end-use...
What's Changed new and changed workflows Add workflow for QIIME2 classification of 16S reads by @go...
What's Changed functionality changes and bug fixes Convert amplicon16S_analysis workflow (QIIME) fr...
What's Changed Feature changes task alignment_metrics: more resilient to large amplicon designs by ...
What's Changed lofreq task portability, misc other edits by @dpark01 in #426 Full Changelog: https...
What's Changed increase tsv_join default mem 7->15 GB by @tomkinsc in #406 update pangolin containe...
What's Changed incorporate assemble_refbased as refine/polish for denovo by @dpark01 in #422 new me...
What's Changed sc2 sequencing report ram and pangolin update fault tolerance by @dpark01 in #410 pa...
What's Changed new features robustness: allow one retry for gisaid uploader [#395] optimizations ...
What's Changed update pangolin and nextclade docker images by @dpark01 in #409 Full Changelog: htt...
new features: most task runtime blocks now support cromwell auto memory scaling/retry automated dat...
new features: new workflow sarscov2_nextstrain [#204, #208, #219] updates to genbank submission [#2...
improvements: sarscov2_biosample_load workflow: stop using today's date in constructing ftp directo...
What's Changed docker image updates nextclade 1.7.0 to 1.10.0 by @dpark01 in #404 pangolin containe...