Compact object binary mergers; neutron star-neutron star or neutron star-black hole have amply been discussed as progenitors of short gamma-ray bursts (sGRBs). Whereas the strength of magnetic field in a neutron star-black hole merger can be ∼1012 \sim 10^{12} G, in a binary neutron star system, the magnetic field could be amplified beyond (∼1015 (\sim 10^{15} - 1016 ) 10^{16}\ ) G. By calculating the effective neutrino potential up to order M−4W M_W^{-4} , we study the emission, propagation, and oscillation of multi MeV-GeV neutrinos in these mergers. In addition, we calculate the neutrino opacity in a GRB event, finding that neutrinos do not escape isotropically but they are collimated in a preferential direction along the jet propagation...