Version 0.5.0 was submitted to Bioinformatics and version 0.6.0 addresses several reviewer comments (detailed below). GRETTA is now GRETTA (with two T's) due conflict with existing package on CRAN. Upon loading GRETTA into R, a welcome message is displayed to indicate package version and the latest DepMap data set that is available. Function arguments are now all lower case. GI_screen() has a new argument gene_list = to allow small-scale GI screens and reduce computational time. Default pan-cancer coessential_map() now uses pre-computed cor matrix to reduce computational time. This matrix is provided along with the DepMap data. A vignette is now available and in a Bioconductor format to prepare for submission (same as readme). Examples a...
This release fixes: Correct version is now reported with --version (only works with cloned source: g...
First release on CRAN! All issues included in this release can be found here. get_param() added as ...
Data updates TCGA (20220329 - v37.0) WikiPathways (20230610) CancerMine (v50, 20230301) COMPARTMENT...
For Bioconductor submission. This version is the same as 0.6.0 except for the version number to comp...
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor...
This is a small update on the state of the code (and movies) when the paper was submitted to JAMES i...
What's Changed Make pydantic 1/2 compatible by @cthoyt in https://github.com/biopragmatics/semra/pu...
Description This package implements a benchmarking of several gene network inference algorithms from...
What's Changed refactor: update ga4gh vrsatile pydantic (gene_id --> gene) by @korikuzma in https:/...
What's Changed Support pydantic1/2 by @cthoyt in https://github.com/biopragmatics/bioontologies/pul...
Gene regulatory networks (GRNs) control embryonic development, and to understand this process in dep...
What's Changed Enforce using CURIEs for all relationships by @cthoyt in https://github.com/biopragm...
There is an increasing number of software packages to analyse biological experimental data in the en...
This update mirrors the Bioconductor 3.17 release version (v1.14.0) News: Correct depreciation warn...
v0.9 has the following updates and changes (July 28, 2020) gene expression raw count normalization...
This release fixes: Correct version is now reported with --version (only works with cloned source: g...
First release on CRAN! All issues included in this release can be found here. get_param() added as ...
Data updates TCGA (20220329 - v37.0) WikiPathways (20230610) CancerMine (v50, 20230301) COMPARTMENT...
For Bioconductor submission. This version is the same as 0.6.0 except for the version number to comp...
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor...
This is a small update on the state of the code (and movies) when the paper was submitted to JAMES i...
What's Changed Make pydantic 1/2 compatible by @cthoyt in https://github.com/biopragmatics/semra/pu...
Description This package implements a benchmarking of several gene network inference algorithms from...
What's Changed refactor: update ga4gh vrsatile pydantic (gene_id --> gene) by @korikuzma in https:/...
What's Changed Support pydantic1/2 by @cthoyt in https://github.com/biopragmatics/bioontologies/pul...
Gene regulatory networks (GRNs) control embryonic development, and to understand this process in dep...
What's Changed Enforce using CURIEs for all relationships by @cthoyt in https://github.com/biopragm...
There is an increasing number of software packages to analyse biological experimental data in the en...
This update mirrors the Bioconductor 3.17 release version (v1.14.0) News: Correct depreciation warn...
v0.9 has the following updates and changes (July 28, 2020) gene expression raw count normalization...
This release fixes: Correct version is now reported with --version (only works with cloned source: g...
First release on CRAN! All issues included in this release can be found here. get_param() added as ...
Data updates TCGA (20220329 - v37.0) WikiPathways (20230610) CancerMine (v50, 20230301) COMPARTMENT...