Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Micro-CTvlab: A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT)

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Michalakis, Nikitas
Filiopoulou, Irene
Minadakis, Nikos
Panteri, Emmanouela
Perantinos, George
Gougousis, Alexandros
Arvanitidis, Christos

November 2016

During recent years, X-ray microtomography (micro-CT) has seen an increasing use in biological resea...

Micro-CT protocols for scanning and 3D analysis of Hexaplex trunculus during its different life stages

Eva Chatzinikolaou
Kleoniki Keklikoglou

September 2021

Micro-computed tomography (micro-CT) is a high-resolution 3D-imaging technique which is now increasi...

Fig. 6.4 in Handbook of best practice and standards for 2D+ and 3D imaging of natural history collections

Brecko, Jonathan
Mathys, Aurore

April 2020

Fig. 6.4. Parietal view of the skull digitised with different scanners.Published as part of Brecko, ...

Fig. 7 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 7. Setup of scanning containers. Images by HCMR micro-CT lab.Published as part of Keklikoglou, ...

Micro-computed tomography for natural history specimens: a handbook of best practice protocols

<h3 class="field-label"> Auteur </h3> ARVANITIDIS

April 2019

Micro-computed tomography (micro-CT or microtomography) is a non-destructive imaging technique using...

Fig. 1 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 1. Schematic overview of the image acquisition process. Image by the Hellenic Centre for Marine...

Fig. 17 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 17. Scan of a marine worm (polychaete) without (A) and with (B) ring artefacts correction durin...

Fig. 4 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 4. Example of the projection images resulting from the scanning process. Image by HCMR micro- C...

Fig. 9 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 9. External morphology of the polychaete Lumbrineris latreilli Audouin & Milne Edwards, 1834. S...

Fig. 8 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 8. Sample mounting techniques for plant specimens of different sizes. A. Large samples (>10 mm)...

Data from: Micro-computed tomography: introducing new dimensions to taxonomy

Faulwetter, Sarah
Vasileiadou, Aikaterini
Kouratoras, Michail
Dailianis, Thanos
Arvanitidis, Christos

February 2013

Continuous improvements in the resolution of three-dimensional imaging have lead to an increased app...

Micro-computed tomography: Introducing new dimensions to taxonomy

Faulwetter, Sarah
Vasileiadou, Aikaterini
Kouratoras, Michail
Dailianis, Thanos
Arvanitidis, Christos

February 2013

Continuous improvements in the resolution of three-dimensional imaging have led to an increased appl...

Handbook of best practice and standards for 2D+ and 3D imaging of natural history collections

Brecko, Jonathan
Mathys, Aurore

April 2020

Brecko, Jonathan, Mathys, Aurore (2020): Handbook of best practice and standards for 2D+ and 3D imag...

Laboratory X-ray micro-computed tomography : a user guideline for biological samples

Du Plessis, Anton
Broeckhoven, Chris
Guelpa, Anina
Le Roux, Stephan Gerhard

January 2015

CITATION: Du Plessis, A. et al. 2017. Laboratory X-ray micro-computed tomography : a user guideline ...

Fig. 21. A. 3D in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 21. A. 3D model of the Omorgus gigas (Harold, 1872) beetle after a quick segmentation, includin...

Micro-CTvlab: A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT)

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Michalakis, Nikitas
Filiopoulou, Irene
Minadakis, Nikos
Panteri, Emmanouela
Perantinos, George
Gougousis, Alexandros
Arvanitidis, Christos

November 2016

During recent years, X-ray microtomography (micro-CT) has seen an increasing use in biological resea...

Micro-CT protocols for scanning and 3D analysis of Hexaplex trunculus during its different life stages

Eva Chatzinikolaou
Kleoniki Keklikoglou

September 2021

Micro-computed tomography (micro-CT) is a high-resolution 3D-imaging technique which is now increasi...

Fig. 6.4 in Handbook of best practice and standards for 2D+ and 3D imaging of natural history collections

Brecko, Jonathan
Mathys, Aurore

April 2020

Fig. 6.4. Parietal view of the skull digitised with different scanners.Published as part of Brecko, ...

Fig. 7 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 7. Setup of scanning containers. Images by HCMR micro-CT lab.Published as part of Keklikoglou, ...

Micro-computed tomography for natural history specimens: a handbook of best practice protocols

<h3 class="field-label"> Auteur </h3> ARVANITIDIS

April 2019

Micro-computed tomography (micro-CT or microtomography) is a non-destructive imaging technique using...

Fig. 1 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 1. Schematic overview of the image acquisition process. Image by the Hellenic Centre for Marine...

Fig. 17 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 17. Scan of a marine worm (polychaete) without (A) and with (B) ring artefacts correction durin...

Fig. 4 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 4. Example of the projection images resulting from the scanning process. Image by HCMR micro- C...

Fig. 9 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 9. External morphology of the polychaete Lumbrineris latreilli Audouin & Milne Edwards, 1834. S...

Fig. 8 in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 8. Sample mounting techniques for plant specimens of different sizes. A. Large samples (>10 mm)...

Data from: Micro-computed tomography: introducing new dimensions to taxonomy

Faulwetter, Sarah
Vasileiadou, Aikaterini
Kouratoras, Michail
Dailianis, Thanos
Arvanitidis, Christos

February 2013

Continuous improvements in the resolution of three-dimensional imaging have lead to an increased app...

Micro-computed tomography: Introducing new dimensions to taxonomy

Faulwetter, Sarah
Vasileiadou, Aikaterini
Kouratoras, Michail
Dailianis, Thanos
Arvanitidis, Christos

February 2013

Continuous improvements in the resolution of three-dimensional imaging have led to an increased appl...

Handbook of best practice and standards for 2D+ and 3D imaging of natural history collections

Brecko, Jonathan
Mathys, Aurore

April 2020

Brecko, Jonathan, Mathys, Aurore (2020): Handbook of best practice and standards for 2D+ and 3D imag...

Laboratory X-ray micro-computed tomography : a user guideline for biological samples

Du Plessis, Anton
Broeckhoven, Chris
Guelpa, Anina
Le Roux, Stephan Gerhard

January 2015

CITATION: Du Plessis, A. et al. 2017. Laboratory X-ray micro-computed tomography : a user guideline ...

Fig. 21. A. 3D in Micro-computed tomography for natural history specimens: a handbook of best practice protocols

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Wils, Patricia
Brecko, Jonathan
Kvaček, Jiří
Metscher, Brian
Arvanitidis, Christos

April 2019

Fig. 21. A. 3D model of the Omorgus gigas (Harold, 1872) beetle after a quick segmentation, includin...

Micro-CTvlab: A web based virtual gallery of biological specimens using X-ray microtomography (micro-CT)

Keklikoglou, Kleoniki
Faulwetter, Sarah
Chatzinikolaou, Eva
Michalakis, Nikitas
Filiopoulou, Irene
Minadakis, Nikos
Panteri, Emmanouela
Perantinos, George
Gougousis, Alexandros
Arvanitidis, Christos

November 2016

During recent years, X-ray microtomography (micro-CT) has seen an increasing use in biological resea...

Micro-CT protocols for scanning and 3D analysis of Hexaplex trunculus during its different life stages

Eva Chatzinikolaou
Kleoniki Keklikoglou

September 2021

Micro-computed tomography (micro-CT) is a high-resolution 3D-imaging technique which is now increasi...

Fig. 6.4 in Handbook of best practice and standards for 2D+ and 3D imaging of natural history collections

Brecko, Jonathan
Mathys, Aurore

April 2020

Fig. 6.4. Parietal view of the skull digitised with different scanners.Published as part of Brecko, ...

Micro-computed tomography for natural history specimens: a handbook of best practice protocols

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Micro-computed tomography for natural history specimens: a handbook of best practice protocols

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