Breaking changes The algorithm now operates in unscaled time (in units of generations) under the hood, which means that tsdate.build_prior_grid now requires the parameter Ne. Features Users now have access to the marginal posterior distributions on node age by running tsdate.get_dates, though this is undocumented for now. Bugfixes A fix to the way likelihoods are added should eliminate numerical errors that are sometimes encountered when dating very large tree sequences
New features None Improvements None Bugfixes Fix bug in calculation of ZHe ages Pull requests ...
S10. Tree obtained when using the host-plant ages obtained from Foster et al. (2017). Node ages are ...
Release version 2.0.3 of the FilteredPush event_date_qc library for testing data quality of date dat...
Changelog: Added the time_units parameter to tsdate.date, allowing users to specify the time units ...
Bugfixes: Mutations at non-inference sites are now guaranteed to be fully parsimonious. Previous ve...
Features When calling sample_data.add_site() the ancestral state does not need to be the first alle...
Minor Release Bugfixes: Fix a bug in the core LS matching algorithm in which the rate of recombinat...
Data and results for Chazot et al. (2018) 'Priors and Posteriors in Bayesian Timing of Divergence An...
New Features added functionality to support inputs with static/ observed (time-dependent) features ...
This minor release adds new features. Code written for prior releases are compatible with this relea...
API breakage: Simulation without tree sequence recording is no longer supported. #607 Bug fixes: T...
New Features added optional activation to get_X_preds (#715) added external vocab option to dls (#...
Summary: Updates the documentation to note the availability on pypi and conda-forge. Itemized Change...
Release version 3.0.2 of the FilteredPush event_date_qc library for testing data quality of date dat...
Release version 2.0.2 of the FilteredPush event_date_qc library for testing data quality of date dat...
New features None Improvements None Bugfixes Fix bug in calculation of ZHe ages Pull requests ...
S10. Tree obtained when using the host-plant ages obtained from Foster et al. (2017). Node ages are ...
Release version 2.0.3 of the FilteredPush event_date_qc library for testing data quality of date dat...
Changelog: Added the time_units parameter to tsdate.date, allowing users to specify the time units ...
Bugfixes: Mutations at non-inference sites are now guaranteed to be fully parsimonious. Previous ve...
Features When calling sample_data.add_site() the ancestral state does not need to be the first alle...
Minor Release Bugfixes: Fix a bug in the core LS matching algorithm in which the rate of recombinat...
Data and results for Chazot et al. (2018) 'Priors and Posteriors in Bayesian Timing of Divergence An...
New Features added functionality to support inputs with static/ observed (time-dependent) features ...
This minor release adds new features. Code written for prior releases are compatible with this relea...
API breakage: Simulation without tree sequence recording is no longer supported. #607 Bug fixes: T...
New Features added optional activation to get_X_preds (#715) added external vocab option to dls (#...
Summary: Updates the documentation to note the availability on pypi and conda-forge. Itemized Change...
Release version 3.0.2 of the FilteredPush event_date_qc library for testing data quality of date dat...
Release version 2.0.2 of the FilteredPush event_date_qc library for testing data quality of date dat...
New features None Improvements None Bugfixes Fix bug in calculation of ZHe ages Pull requests ...
S10. Tree obtained when using the host-plant ages obtained from Foster et al. (2017). Node ages are ...
Release version 2.0.3 of the FilteredPush event_date_qc library for testing data quality of date dat...